Transcript 343610

Transcript

ID CARD

MetamORF ID

343610

ENSMUST00000022429

Name

Arf4-201

Strand

Biotype

protein_coding

Start-end positions

26638074-26657258

CDS Start-stop positions

26638420-26655982

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:11843

Aliases

AA407803,
Arf4, ENSMUSG00000021877, MGI:99433,
NCBI:11843, OFF:Arf4

Chr 14

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
676944	192	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil, v6-5
10698	36	ATG ...	MLL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
1178922	39	AGG ...	RGN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
30236	78	ATG ...	MLV ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
674654	222	CTG ...	LSA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
10812	30	CTG ...	LAR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
10820	45	TTG ...	LDW ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
947278	141	ATA ...	IAM ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1179431	132	ATC ...	IVK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
945833	51	AAG ...	KIK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1310428	117	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
30102	72	GTG ...	VVK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
945562	57	ATA ...	IAM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1309502	120	ACG ...	TPS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1308495	66	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
30272	129	GTG ...	VKE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, v6-5
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
345379	36	TTG ...	LFH ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
945384	180	ACG ...	TPR ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
945233	129	ACG ...	TSC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
30361	75	TTG ...	LVV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
10995	33	CTG ...	LLA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC
678391	171	GTG ...	VTW ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
30054	135	ATG ...	MIV ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, NSC, v6-5
946971	66	AAG ...	KIK ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
676319	213	TTG ...	LER ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil, NSC, v6-5
1308980	225	ATT ...	ILS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1309813	36	AGG ...	RGN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
348492	51	GTG ...	VSR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, NSC, v6-5
343609	90	CTG ...	LSR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, Neutrophil, v6-5
1614438	42	ATG ...	MFD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF

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