Transcript 28368 | MetamORF

Transcript

ID CARD

MetamORF ID

28368

ENSMUST00000166075

Name

Arf4-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

26638226-26656801

CDS Start-stop positions

26638420-26646934

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:11843

Aliases

AA407803,
Arf4, ENSMUSG00000021877, MGI:99433,
NCBI:11843, OFF:Arf4

Chr 14

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11013	42	CTG ...	LFG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell, Testis
28704	135	CTG ...	LQD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
945801	36	ATT ...	IGC ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
343609	90	CTG ...	LSR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Spleen_B_cell
10936	57	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC
11120	48	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Testis
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell, Testis
11035	93	CTG ...	LPN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, BMDC, C2C12, Spleen_B_cell, Testis
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
946155	30	AAG ...	KQM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
946133	39	AGG ...	RSA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, MEF
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, BMDC, Spleen_B_cell, Testis
10995	33	CTG ...	LLA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
29428	60	CTG ...	LKL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Spleen_B_cell, Testis
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Spleen_B_cell
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
348492	51	GTG ...	VSR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Spleen_B_cell
29720	69	CTG ...	LYK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Spleen_B_cell, Testis
29009	123	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
944687	78	ACG ...	TTI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
10820	45	TTG ...	LDW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell
944870	57	AAG ...	KLG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, BMDC, Spleen_B_cell, Testis
11071	96	TTG ...	LDA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell, Testis
345379	36	TTG ...	LFH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Spleen_B_cell
11055	54	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
29401	126	GTG ...	VET ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell, Testis
28947	120	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Spleen_B_cell, Testis
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
945233	129	ACG ...	TSC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	BMDC
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF, Spleen_B_cell, Testis
28965	147	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
10685	36	CTG ...	LDW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell, Testis
10698	36	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
945782	45	AGG ...	RDW ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
945920	33	ATC ...	ICQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
29050	135	TTG ...	LAF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
10812	30	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
945036	63	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Spleen_B_cell, Testis
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
946046	87	AAG ...	KCH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
10762	48	CTG ...	LYE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Spleen_B_cell, Testis
945833	51	AAG ...	KIK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC

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