Transcript 30055 | MetamORF

Transcript

ID CARD

MetamORF ID

30055

ENSMUST00000112318

Name

Arf4-202

Strand

Biotype

protein_coding

Start-end positions

26638347-26656814

CDS Start-stop positions

26638420-26655982

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:11843

Aliases

AA407803,
Arf4, ENSMUSG00000021877, MGI:99433,
NCBI:11843, OFF:Arf4

Chr 14

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
30054	135	ATG ...	MIV ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, R1E
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, R1E
348492	51	GTG ...	VSR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver, R1E
345379	36	TTG ...	LFH ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, R1E
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, R1E
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, R1E
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Liver, MEF, R1E
30361	75	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell, Testis
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, R1E
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, R1E
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
30236	78	ATG ...	MLV ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
30272	129	GTG ...	VKE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
30102	72	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell, Testis
1614438	42	ATG ...	MFD ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E

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