Gene Gm21988 | MetamORF

Gene

ID CARD

Gm21988

Aliases

Gm21988

Chromosome

Transcripts

25 ORFs
2 known transcripts
34 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

20806

ENSMUST00000176268

Gm21988-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
17986	45	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
17430	117	CTG ...	LCS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	NMD Overlapping sORF Upstream	3T3, BMDC, E14, Liver
934525	78	ACG ...	TKL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1285422	72	AGG ...	RAA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
19088	183	GTG ...	VYE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
90796	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Liver
1286061	57	AAG ...	KTP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
931506	69	ATA ...	IFF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
19981	117	CTG ...	LYE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	Liver
1287435	105	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
20805	42	GTG ...	VIM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
1290891	90	ACG ...	TEI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
931841	63	ATC ...	IVL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
19683	195	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
299843	279	CTG ...	LFH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
934020	156	ACG ...	TSK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
21450	78	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
933763	81	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
91829	51	GTG ...	VGL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, BMDC, Liver
18585	75	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
932386	150	AAG ...	KSA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
91203	63	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
91617	96	CTG ...	LCC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, Liver
931232	93	ATC ...	IPP ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	NMD Overlapping sORF Upstream	BMDC, E14

1036754

ENSMUST00000176116

Gm21988-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91829	51	GTG ...	VGL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil, R1E
90796	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	R1E
18585	75	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
17430	117	CTG ...	LCS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil, R1E
91203	63	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
21450	78	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	R1E
1695293	78	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	MEF
17986	45	GTG ...	VLI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
91617	96	CTG ...	LCC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil, R1E
19981	117	CTG ...	LYE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	Neutrophil

ORFs

25 ORFs
2 known transcripts
34 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

19088

183

GTG...

VYE...

GTG

ncRNA
sORF
Downstream
NMD
Alternative
Overlapping

Spleen_B_cell, Brain, E14,
MEF, v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22659	ENSMUST00000148878	0610010K14Rik-213	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
23205	ENSMUST00000138658	0610010K14Rik-212	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
17613	ENSMUST00000021180	0610010K14Rik-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

90796

GTG...

VAS...

GTG

InCDS
Overlapping
sORF
NMD
Upstream
Alternative

Liver, Spleen_B_cell, BMDC,
R1E, B_cell, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
450862	ENSMUST00000040428	Rnasek-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

17986

GTG...

VLI...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

Liver, MEF, Neutrophil,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

18585

CTG...

LRA...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA
Downstream
Intronic

Testis, Brain, Spleen_B_cell,
R1E, E14, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17613	ENSMUST00000021180	0610010K14Rik-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
22659	ENSMUST00000148878	0610010K14Rik-213	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1078761	ENSMUST00000150504	0610010K14Rik-214	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

91829

GTG...

VGL...

GTG

NMD
sORF
Upstream
Alternative
InCDS
Overlapping

Neutrophil, R1E, B_cell,
Brain, Testis, Liver,
Spleen_B_cell, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	strong	5	sORFs_org_Mouse
450862	ENSMUST00000040428	Rnasek-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

1285422

AGG...

RAA...

AGG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17613	ENSMUST00000021180	0610010K14Rik-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

21450

CTG...

LAA...

CTG

CDS
NMD
sORF
Alternative
Upstream
InCDS
Overlapping

Brain, Testis, R1E,
3T3, BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

17430

117

CTG...

LCS...

CTG

NMD
Overlapping
sORF
Upstream
Alternative

3T3, BMDC, E14,
Liver, Neutrophil, R1E,
B_cell, Brain, Testis,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	weak	5	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
450862	ENSMUST00000040428	Rnasek-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

19683

195

GTG...

VKR...

GTG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

Spleen_B_cell, Testis, E14,
MEF, v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22659	ENSMUST00000148878	0610010K14Rik-213	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
17613	ENSMUST00000021180	0610010K14Rik-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
23205	ENSMUST00000138658	0610010K14Rik-212	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

934525

ACG...

TKL...

ACG

Alternative
Downstream
NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1286061

AAG...

KTP...

AAG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

931506

ATA...

IFF...

ATA

Alternative
InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

19981

117

CTG...

LYE...

CTG

Alternative
Downstream
NMD
sORF
CDS

Brain, Testis, Liver,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

91203

GTG...

VKR...

GTG

ncRNA
sORF
Intronic
Alternative
Downstream
NMD
InCDS
Overlapping

Brain, Spleen_B_cell, BMDC,
E14, MEF, v6-5,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22659	ENSMUST00000148878	0610010K14Rik-213	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
1078761	ENSMUST00000150504	0610010K14Rik-214	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
17613	ENSMUST00000021180	0610010K14Rik-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1287435

105

ATC...

IFS...

ATC

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

91617

CTG...

LCC...

CTG

CDS
NMD
sORF
Alternative
Upstream
InCDS
Overlapping

B_cell, Brain, MEF,
Testis, Neutrophil, R1E,
3T3, BMDC, E14,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

20805

GTG...

VIM...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1290891

ACG...

TEI...

ACG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

299843

279

CTG...

LFH...

CTG

Downstream
NMD
sORF
Alternative
Overlapping

Brain, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

931841

ATC...

IVL...

ATC

Alternative
InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1695293

TTG...

LTT...

TTG

NMD
Overlapping
sORF
Upstream

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

934020

156

ACG...

TSK...

ACG

Alternative
Downstream
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

933763

AAG...

KLA...

AAG

Alternative
InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

932386

150

AAG...

KSA...

AAG

Alternative
Downstream
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

931232

ATC...

IPP...

ATC

NMD
Overlapping
sORF
Upstream

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

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