Transcript 20806 | MetamORF

Transcript

ID CARD

MetamORF ID

20806

ENSMUST00000176268

Name

Gm21988-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

70235250-70239803

CDS Start-stop positions

70238329-70239733

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

Gm21988

Aliases

Gm21988

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
17986	45	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
17430	117	CTG ...	LCS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	NMD Overlapping sORF Upstream	3T3, BMDC, E14, Liver
934525	78	ACG ...	TKL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1285422	72	AGG ...	RAA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
19088	183	GTG ...	VYE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
90796	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Liver
1286061	57	AAG ...	KTP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
931506	69	ATA ...	IFF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
19981	117	CTG ...	LYE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	Liver
1287435	105	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
20805	42	GTG ...	VIM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
1290891	90	ACG ...	TEI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
931841	63	ATC ...	IVL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
19683	195	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
299843	279	CTG ...	LFH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
934020	156	ACG ...	TSK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
21450	78	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
933763	81	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
91829	51	GTG ...	VGL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, BMDC, Liver
18585	75	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
932386	150	AAG ...	KSA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
91203	63	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
91617	96	CTG ...	LCC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, Liver
931232	93	ATC ...	IPP ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	NMD Overlapping sORF Upstream	BMDC, E14

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