Transcript 22659 | MetamORF

Transcript

ID CARD

MetamORF ID

22659

ENSMUST00000148878

Name

0610010K14Rik-213

Strand

Biotype

processed_transcript

Start-end positions

70235371-70237489

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:104457

Aliases

0610010K14Rik,
1110020A23Rik, AL033328, AU045833,
Bap18, ENSMUSG00000020831, MGI:1915609,
NCBI:104457, OFF:0610010K14Rik

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19088	183	GTG ...	VYE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
447271	63	GTG ...	VDG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
655616	300	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
19683	195	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
18585	75	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
453338	30	GTG ...	VSL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
91203	63	GTG ...	VKR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
1531098	54	CTG ...	LDS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
419787	246	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	C2C12
1528778	60	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
23292	285	CTG ...	LLP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
22658	222	GTG ...	VYE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
23613	282	CTG ...	LPH ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
23831	234	GTG ...	VKR ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1293185	81	AAG ...	KKQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1340942	72	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain

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