Gene NCBI:93709 | MetamORF

Gene

ID CARD

NCBI:93709

Aliases

ENSMUSG00000103144
MGI:1935212, NCBI:93709, OFF:Pcdhga1
Pcdhga1

Chromosome

Transcripts

17 ORFs
1 known transcript
17 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

396740

ENSMUST00000194190

Pcdhga1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
714704	63	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
397005	51	CTG ...	LLM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
399718	114	CTG ...	LTG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, R1E, v6-5
714497	51	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
716052	87	ATG ...	MTT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
393585	60	GTG ...	VMK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
716679	30	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
713101	60	ATG ...	MCN ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
393416	102	ATG ...	MPL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
398030	45	ATG ...	MGA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
393235	51	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
396739	39	ATG ...	MLT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
714053	69	TTG ...	LNR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
713065	39	CTG ...	LKT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
713244	45	CTG ...	LKD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
394637	48	CTG ...	LMG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
715264	75	CTG ...	LTA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

ORFs

17 ORFs
1 known transcript
17 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

714704

CTG...

LTS...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

393585

GTG...

VMK...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

MEF, 3T3, R1E,
Brain, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse

393416

102

ATG...

MPL...

ATG

Alternative
Downstream
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, Brain,
NSC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1719393	ENSMUST00000192511	Pcdhga7-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	weak	1	Johnstone2016
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
2475058	ENSMUST00000193404	Pcdhga10-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475124	ENSMUST00000194928	Pcdhgb7-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474771	ENSMUST00000195363	Pcdhgb4-202	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474893	ENSMUST00000192535	Pcdhgb5-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
393140	ENSMUST00000073447	Pcdhga3-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
3171959	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
2474232	ENSMUST00000115661	Gm42416-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	weak	1	sORFs_org_Mouse
2475172	ENSMUST00000061279	Pcdhga11-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474484	ENSMUST00000194418	Pcdhga4-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474584	ENSMUST00000193414	Pcdhga5-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475008	ENSMUST00000003599	Pcdhgb6-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475298	ENSMUST00000193941	Pcdhgc5-204	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475230	ENSMUST00000044851	Pcdhga12-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474542	ENSMUST00000195112	Pcdhgb2-202	protein_coding	Ribo-seq	weak	1	Johnstone2016
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq	weak	1	Johnstone2016

398030

ATG...

MGA...

ATG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

3T3, Glioma, Liver,
MEF, MESC, Brain,
E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2474542	ENSMUST00000195112	Pcdhgb2-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475058	ENSMUST00000193404	Pcdhga10-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475230	ENSMUST00000044851	Pcdhga12-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475298	ENSMUST00000193941	Pcdhgc5-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
2474584	ENSMUST00000193414	Pcdhga5-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2474484	ENSMUST00000194418	Pcdhga4-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2474893	ENSMUST00000192535	Pcdhgb5-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475172	ENSMUST00000061279	Pcdhga11-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
393140	ENSMUST00000073447	Pcdhga3-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2474232	ENSMUST00000115661	Gm42416-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
1719393	ENSMUST00000192511	Pcdhga7-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2475008	ENSMUST00000003599	Pcdhgb6-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2474771	ENSMUST00000195363	Pcdhgb4-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475124	ENSMUST00000194928	Pcdhgb7-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

399718

114

CTG...

LTG...

CTG

InCDS
Overlapping
sORF
Alternative

3T3, MEF, E14,
NSC, R1E, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
411523	ENSMUST00000208907	Pcdhgb8-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

397005

CTG...

LLM...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, MEF,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
1719393	ENSMUST00000192511	Pcdhga7-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

394637

CTG...

LMG...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1719393	ENSMUST00000192511	Pcdhga7-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	weak	1	sORFs_org_Mouse

714497

CTG...

LST...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

716052

ATG...

MTT...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

393235

CTG...

LAP...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

Brain, E14, R1E,
MEF, 3T3, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	strong	1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

716679

TTG...

LVL...

TTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

713101

ATG...

MCN...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

396739

ATG...

MLT...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

714053

TTG...

LNR...

TTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

713065

CTG...

LKT...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

713244

CTG...

LKD...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

715264

CTG...

LTA...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

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