ORF 398030 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

398030

Chromosome

Strand

Start-stop positions

37839912-37839956

Nucleic length (bp)

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MGA ...

Spliced: No

Exons

Exons start-end

Genome browsers

UCSC

Transcripts

23 known transcripts

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
713989	ENSMUST00000091935	protein_coding	NCBI:93717	2766 - 2810	Ribo-seq	CTGCTGATGG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
2474542	ENSMUST00000195112	protein_coding	NCBI:93700	2700 - 2744	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2475058	ENSMUST00000193404	protein_coding	NCBI:93722	2771 - 2815	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2475230	ENSMUST00000044851	protein_coding	NCBI:93724	3119 - 3163	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2475298	ENSMUST00000193941	protein_coding	NCBI:93708	305 - 349	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
714198	ENSMUST00000066149	protein_coding	NCBI:93716	2769 - 2813	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1630293	ENSMUST00000193869	protein_coding	NCBI:93710	2731 - 2775	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1154393	ENSMUST00000192103	nonsense_mediated_decay	NCBI:93706	1627 - 1671	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
411428	ENSMUST00000195764	polymorphic_pseudogene	NCBI:93705	2657 - 2701	Ribo-seq	CTGCTGATGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
2474584	ENSMUST00000193414	protein_coding	NCBI:93713	2703 - 2747	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1196335	ENSMUST00000195239	protein_coding	NCBI:93707	311 - 355	Ribo-seq	CTGCTGATGG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
2474484	ENSMUST00000194418	protein_coding	NCBI:93712	2766 - 2810	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2474893	ENSMUST00000192535	protein_coding	NCBI:93702	2709 - 2753	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2475172	ENSMUST00000061279	protein_coding	NCBI:93723	2795 - 2839	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
392627	ENSMUST00000192931	protein_coding	NCBI:93699	2765 - 2809	Ribo-seq	CTGCTGATGG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
396740	ENSMUST00000194190	protein_coding	NCBI:93709	2731 - 2775	Ribo-seq	CTGCTGATGG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
393140	ENSMUST00000073447	protein_coding	NCBI:93711	2759 - 2803	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2474232	ENSMUST00000115661	protein_coding	NCBI:100384868	2568 - 2612	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1005901	ENSMUST00000195823	protein_coding	NCBI:93714	2772 - 2816	Ribo-seq	CTGCTGATGG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1719393	ENSMUST00000192511	protein_coding	NCBI:93715	2769 - 2813	Ribo-seq	CTGCTGATGG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2475008	ENSMUST00000003599	protein_coding	NCBI:93703	2723 - 2767	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2474771	ENSMUST00000195363	protein_coding	NCBI:93701	2707 - 2751	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2475124	ENSMUST00000194928	protein_coding	NCBI:93704	2752 - 2796	Ribo-seq	CTGCTGATGG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

Export data