Gene NCBI:93706 | MetamORF

Gene

ID CARD

NCBI:93706

Aliases

ENSMUSG00000102918
MGI:1935201, NCBI:93706, OFF:Pcdhgc3
PC43, Pcdh2, Pcdhgc3

Chromosome

Transcripts

57 ORFs
3 known transcripts
58 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

1154393

ENSMUST00000192103

Pcdhgc3-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1498634	180	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
392623	54	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1498307	168	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498576	108	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
393316	51	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	NSC, v6-5
1498872	54	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	NSC
396861	96	CTG ...	LAN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1155138	177	CTG ...	LSA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
1498615	135	ATG ...	MLG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
398030	45	ATG ...	MGA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
393587	84	ATG ...	MAR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1498332	78	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1499003	69	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498110	60	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
394086	51	CTG ...	LAF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC, v6-5
1498792	102	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1498825	96	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	NSC
1498990	78	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498587	219	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1499192	105	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1498434	126	CTG ...	LHC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1499199	147	ATG ...	MQG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, NSC
1155752	36	ATG ...	MWG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1498706	240	ATG ...	MEE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1499023	126	ATG ...	MHP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
393585	60	GTG ...	VMK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, NSC, v6-5
1498297	45	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
393416	102	ATG ...	MPL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, NSC
1498836	87	CTG ...	LTW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498253	87	TTG ...	LPW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1154491	36	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1498891	81	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	NSC
1498971	69	ATG ...	MRF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
395265	60	ATG ...	MAT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
392626	48	CTG ...	LTT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC, v6-5
1156143	204	CTG ...	LGG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
1155382	138	GTG ...	VPD ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
1498753	195	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498728	60	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1498808	93	TTG ...	LQL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498790	192	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1154392	39	GTG ...	VRW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	NSC, v6-5
13682	90	CTG ...	LTN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
1154707	33	CTG ...	LWD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC, v6-5
393235	51	CTG ...	LAP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, NSC, v6-5
1155311	147	CTG ...	LQH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
1498446	51	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
392855	66	GTG ...	VVM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1154977	54	ATG ...	MPA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, v6-5
1498861	108	TTG ...	LGT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1499162	69	CTG ...	LEN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
40075	42	ATG ...	MSD ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative NMD sORF Upstream	E14, Glioma, Liver, MEF, MESC, NSC
1154662	117	GTG ...	VYI ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
1498439	174	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1498379	72	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1499028	144	GTG ...	VRD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC

392624

ENSMUST00000076807

Pcdhgc3-201

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

392623

CTG ...

LCS ...

Ribo-seq

CTG

sORFs_org_Mouse

Brain

3084888

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
411472	135	ATG ...	MRS ...	Predicted	ATG		1	Samandi2017	sORF
1498706	240	ATG ...	MEE ...	Predicted	ATG		1	Samandi2017	sORF
1499199	147	ATG ...	MQG ...	Predicted	ATG		1	Samandi2017	sORF

40076

ENSMUST00000194447

Pcdhgc3-203

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

40075

ATG ...

MSD ...

Ribo-seq

ATG

moderate

sORFs_org_Mouse

Testis

ORFs

57 ORFs
3 known transcripts
58 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1498634

180

ATG...

MTM...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

1498332

ATG...

MRA...

ATG

InCDS
Overlapping
sORF
Alternative
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

393585

GTG...

VMK...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

MEF, 3T3, R1E,
Brain, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse

393416

102

ATG...

MPL...

ATG

Alternative
Downstream
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, Brain,
NSC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1719393	ENSMUST00000192511	Pcdhga7-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	weak	1	Johnstone2016
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
2475058	ENSMUST00000193404	Pcdhga10-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475124	ENSMUST00000194928	Pcdhgb7-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474771	ENSMUST00000195363	Pcdhgb4-202	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474893	ENSMUST00000192535	Pcdhgb5-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
393140	ENSMUST00000073447	Pcdhga3-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
3171959	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
2474232	ENSMUST00000115661	Gm42416-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	weak	1	sORFs_org_Mouse
2475172	ENSMUST00000061279	Pcdhga11-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474484	ENSMUST00000194418	Pcdhga4-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474584	ENSMUST00000193414	Pcdhga5-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475008	ENSMUST00000003599	Pcdhgb6-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475298	ENSMUST00000193941	Pcdhgc5-204	protein_coding	Ribo-seq	weak	1	Johnstone2016
2475230	ENSMUST00000044851	Pcdhga12-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2474542	ENSMUST00000195112	Pcdhgb2-202	protein_coding	Ribo-seq	weak	1	Johnstone2016
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq	weak	1	Johnstone2016

398030

ATG...

MGA...

ATG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

3T3, Glioma, Liver,
MEF, MESC, Brain,
E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2474542	ENSMUST00000195112	Pcdhgb2-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475058	ENSMUST00000193404	Pcdhga10-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475230	ENSMUST00000044851	Pcdhga12-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475298	ENSMUST00000193941	Pcdhgc5-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
2474584	ENSMUST00000193414	Pcdhga5-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2474484	ENSMUST00000194418	Pcdhga4-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2474893	ENSMUST00000192535	Pcdhgb5-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475172	ENSMUST00000061279	Pcdhga11-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
393140	ENSMUST00000073447	Pcdhga3-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2474232	ENSMUST00000115661	Gm42416-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
1719393	ENSMUST00000192511	Pcdhga7-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2475008	ENSMUST00000003599	Pcdhgb6-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2474771	ENSMUST00000195363	Pcdhgb4-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2475124	ENSMUST00000194928	Pcdhgb7-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

1498836

CTG...

LTW...

CTG

InCDS
Overlapping
sORF
Alternative
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1499199

147

ATG...

MQG...

ATG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

Brain, Glioma, Liver,
MEF, MESC, NSC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
3084888	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

392855

GTG...

VVM...

GTG

Alternative
Downstream
Overlapping
sORF
NMD

MEF, Brain, NSC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

392623

CTG...

LCS...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
392624	ENSMUST00000076807	Pcdhgc3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

396861

CTG...

LAN...

CTG

Alternative
Downstream
Overlapping
sORF
NMD

MEF, Brain, NSC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse

1498110

CTG...

LQK...

CTG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

394086

CTG...

LAF...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

E14, 3T3, NSC,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
394087	ENSMUST00000193890	Pcdhgc5-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

1498861

108

TTG...

LGT...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

393316

CTG...

LTG...

CTG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

Brain, NSC, v6-5,
3T3, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1498307

168

CTG...

LPS...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

1498576

108

CTG...

LVL...

CTG

Alternative
Downstream
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

411472

135

ATG...

MRS...

ATG

sORF
InCDS
Overlapping

Brain, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3084888	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		2	sORFs_org_Mouse

1498872

CTG...

LQA...

CTG

Downstream
NMD
sORF
Alternative
InCDS
Overlapping

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

1499162

CTG...

LEN...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

392626

CTG...

LTT...

CTG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

3T3, Brain, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	weak	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1498990

ATG...

MST...

ATG

InCDS
Overlapping
sORF
Alternative
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498439

174

ATG...

MRL...

ATG

InCDS
Overlapping
sORF
Alternative
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

395265

ATG...

MAT...

ATG

Downstream
Overlapping
sORF
Alternative
NMD

3T3, MEF, E14,
Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	strong	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

1156143

204

CTG...

LGG...

CTG

Alternative
CDS
sORF
Downstream
NMD

Brain, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	strong	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

1155138

177

CTG...

LSA...

CTG

Downstream
NMD
sORF
Alternative
CDS

E14, NSC, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse

1499003

TTG...

LRS...

TTG

InCDS
Overlapping
sORF
Alternative
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498615

135

ATG...

MLG...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

393587

ATG...

MAR...

ATG

Alternative
Downstream
NMD
sORF
Overlapping

NSC, 3T3, Brain,
E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
713989	ENSMUST00000091935	Pcdhga9-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	strong	1	sORFs_org_Mouse
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

1498792

102

CTG...

LPA...

CTG

Alternative
Downstream
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498825

GTG...

VQP...

GTG

Alternative
CDS
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

40075

ATG...

MSD...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD
Upstream

Brain, C2C12, Testis,
E14, Glioma, Liver,
MEF, MESC, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		2	sORFs_org_Mouse
40076	ENSMUST00000194447	Pcdhgc3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016

1498587

219

CTG...

LGR...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

1499192

105

GTG...

VLP...

GTG

Alternative
Downstream
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498434

126

CTG...

LHC...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1155752

ATG...

MWG...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498706

240

ATG...

MEE...

ATG

InCDS
Overlapping
sORF
Alternative
NMD

Brain, NSC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
3084888	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

393235

CTG...

LAP...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

Brain, E14, R1E,
MEF, 3T3, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
392627	ENSMUST00000192931	Pcdhgb1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1196335	ENSMUST00000195239	Pcdhgc4-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	strong	1	sORFs_org_Mouse
396740	ENSMUST00000194190	Pcdhga1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1005901	ENSMUST00000195823	Pcdhga6-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1630293	ENSMUST00000193869	Pcdhga2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
714198	ENSMUST00000066149	Pcdhga8-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

1499023

126

ATG...

MHP...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

1498297

CTG...

LRM...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1155311

147

CTG...

LQH...

CTG

Alternative
CDS
sORF
Downstream
NMD

Brain, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

1498253

TTG...

LPW...

TTG

Alternative
Downstream
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1154707

CTG...

LWD...

CTG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

Brain, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

1154491

TTG...

LQS...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1154662

117

GTG...

VYI...

GTG

Alternative
CDS
sORF
Downstream
NMD

Brain, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

1498891

GTG...

VRP...

GTG

Alternative
CDS
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498971

ATG...

MRF...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1155382

138

GTG...

VPD...

GTG

Downstream
NMD
sORF
Alternative
CDS

E14, NSC, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	weak	1	sORFs_org_Mouse

1498753

195

CTG...

LGD...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498728

GTG...

VIL...

GTG

Alternative
Downstream
NMD
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1498790

192

TTG...

LAL...

TTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1498808

TTG...

LQL...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq		1	sORFs_org_Mouse

13682

CTG...

LTN...

CTG

Alternative
CDS
sORF
Downstream
NMD
ncRNA

Brain, E14, NSC,
v6-5, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
411428	ENSMUST00000195764	Pcdhgb8-201	polymorphic_pseudogene	Ribo-seq	moderate	1	sORFs_org_Mouse
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
13683	ENSMUST00000192861	Gm38182-202	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse

1154392

GTG...

VRW...

GTG

Alternative
NMD
Overlapping
sORF
Upstream

NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

1498446

CTG...

LSL...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1154977

ATG...

MPA...

ATG

Alternative
Downstream
NMD
sORF

Glioma, Liver, MEF,
MESC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

1498379

CTG...

LER...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1499028

144

GTG...

VRD...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1154393	ENSMUST00000192103	Pcdhgc3-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

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