ORF 393416 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

393416

Chromosome

Strand

Start-stop positions

37840047-37840148

Nucleic length (bp)

102

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MPL ...

Spliced: No

Exons

Exons start-end

Genome browsers

UCSC

Transcripts

23 known transcripts

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1719393	ENSMUST00000192511	protein_coding	NCBI:93715	2904 - 3005	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
1196335	ENSMUST00000195239	protein_coding	NCBI:93707	446 - 547	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
392627	ENSMUST00000192931	protein_coding	NCBI:93699	2900 - 3001	Ribo-seq	TGACCAATGC	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
2475058	ENSMUST00000193404	protein_coding	NCBI:93722	2906 - 3007	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2475124	ENSMUST00000194928	protein_coding	NCBI:93704	2887 - 2988	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2474771	ENSMUST00000195363	protein_coding	NCBI:93701	2842 - 2943	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2474893	ENSMUST00000192535	protein_coding	NCBI:93702	2844 - 2945	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
393140	ENSMUST00000073447	protein_coding	NCBI:93711	2894 - 2995	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
3171959	UNKNOWN_TRANSCRIPT		Pcdhga1_Pcdhga10_Pcdhga11_Pcdhga12_Pcdhga2_Pcdhga3_Pcdhga4_Pcdhga5_Pcdhga6_Pcdhga7_Pcdhga8_Pcdhga9_Pcdhgb1_Pcdhgb2_Pcdhgb4_Pcdhgb5_Pcdhgb6_Pcdhgb7_Pcdhgb8_Pcdhgc3_Pcdhgc4_Pcdhgc5	-	Predicted			1	Samandi2017	sORF
1005901	ENSMUST00000195823	protein_coding	NCBI:93714	2907 - 3008	Ribo-seq	TGACCAATGC	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
2474232	ENSMUST00000115661	protein_coding	NCBI:100384868	2703 - 2804	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
1154393	ENSMUST00000192103	nonsense_mediated_decay	NCBI:93706	1762 - 1863	Ribo-seq	TGACCAATGC	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, NSC
1630293	ENSMUST00000193869	protein_coding	NCBI:93710	2866 - 2967	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
396740	ENSMUST00000194190	protein_coding	NCBI:93709	2866 - 2967	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
713989	ENSMUST00000091935	protein_coding	NCBI:93717	2901 - 3002	Ribo-seq	TGACCAATGC	weak	2	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
411428	ENSMUST00000195764	polymorphic_pseudogene	NCBI:93705	2792 - 2893	Ribo-seq	TGACCAATGC	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
2475172	ENSMUST00000061279	protein_coding	NCBI:93723	2930 - 3031	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2474484	ENSMUST00000194418	protein_coding	NCBI:93712	2901 - 3002	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2474584	ENSMUST00000193414	protein_coding	NCBI:93713	2838 - 2939	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2475008	ENSMUST00000003599	protein_coding	NCBI:93703	2858 - 2959	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2475298	ENSMUST00000193941	protein_coding	NCBI:93708	440 - 541	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
2475230	ENSMUST00000044851	protein_coding	NCBI:93724	3254 - 3355	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
2474542	ENSMUST00000195112	protein_coding	NCBI:93700	2835 - 2936	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
714198	ENSMUST00000066149	protein_coding	NCBI:93716	2904 - 3005	Ribo-seq	TGACCAATGC	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC

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