Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:66471

Aliases

2810018A15Rik
AI047746, AI326868, Anp32e
CPD1, ENSMUSG00000015749, LANP-L
LANPL, MGI:1913721, mLANP-L
NCBI:66471, OFF:Anp32e

Chromosome

3

Transcripts

73 ORFs
9 known transcripts
144 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

535789 ENSMUST00000169426 Anp32e-206 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

503311 114

TTG ...

LRL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
506074 252

GTG ...

VCA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
506914 258

GTG ...

VKV ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
539220 138

GTG ...

VDS ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, R1E
751517 48

GTG ...

VGV ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
538665 168

GTG ...

VRA ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
E14
503864 111

CTG ...

LRA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, Neutrophil
536609 156

GTG ...

VCA ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
E14
504194 75

CTG ...

LCE ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
504481 63

GTG ...

VCV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
750494 54

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
54160 66

TTG ...

LGI ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
535788 126

GTG ...

VGA ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, R1E
505317 234

GTG ...

VRA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
504254 222

GTG ...

VCG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
54700 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, R1E
1682708 33

ATG ...

MIA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
MEF
505574 126

TTG ...

LKG ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, Neutrophil,
v6-5
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

54160 66

TTG ...

LGI ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
MEF, Neutrophil
52598 108

ATG ...

MKL ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF, Neutrophil, NSC,
v6-5
507387 120

ATG ...

MRT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF, Neutrophil, NSC,
v6-5
130694 57

ATG ...

MKL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
v6-5
1014742 75

CTG ...

LSG ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC
1056406 57

CTG ...

LEA ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1374765 105

ATG ...

MSK ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, NSC
507096 135

ATG ...

MKM ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
129013 171

GTG ...

VRS ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1013657 153

TTG ...

LEL ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
507148 51

CTG ...

LAQ ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
v6-5
139957 33

GTG ...

VCQ ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF, Neutrophil, NSC,
v6-5
1057279 39

TTG ...

LLV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF, Neutrophil, NSC,
v6-5
127614 132

TTG ...

LNC ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC, v6-5
818264 141

CTG ...

LEF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, Neutrophil
140103 189

TTG ...

LCV ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, MEF, Neutrophil
506311 63

ATG ...

MRM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
v6-5
819004 162

CTG ...

LND ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, MEF, Neutrophil
507087 51

ATG ...

MTP ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF, Neutrophil, NSC,
v6-5
1056491 117

GTG ...

VEL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Neutrophil
131801 216

GTG ...

VTE ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, v6-5
506571 69

ATG ...

MTM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
v6-5
505351 129

ATG ...

MRK ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF, Neutrophil, NSC,
v6-5
1056606 111

TTG ...

LSS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Neutrophil
1013682 120

TTG ...

LEV ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
1014376 33

TTG ...

LKN ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC, v6-5
54700 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
MEF, Neutrophil
54306 102

CTG ...

LAH ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF, Neutrophil, NSC,
v6-5
1014602 111

CTG ...

LAE ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, Liver, MEF,
Neutrophil, NSC, v6-5
127302 141

ATG ...

MEM ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF, Neutrophil, NSC,
v6-5
504632 84

ATG ...

MKR ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF, Neutrophil, v6-5
503312 ENSMUST00000015893 Anp32e-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

139957 33

GTG ...

VCQ ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
506611 57

GTG ...

VPE ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
504632 84

ATG ...

MKR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
1057279 39

TTG ...

LLV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
54306 102

CTG ...

LAH ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
52598 108

ATG ...

MKL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
129013 171

GTG ...

VRS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
507387 120

ATG ...

MRT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
506311 63

ATG ...

MRM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
130694 57

ATG ...

MKL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
507148 51

CTG ...

LAQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
507096 135

ATG ...

MKM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
127614 132

TTG ...

LNC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
54700 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
505574 126

TTG ...

LKG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
506074 252

GTG ...

VCA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
504254 222

GTG ...

VCG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
1374765 105

ATG ...

MSK ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
504481 63

GTG ...

VCV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
54160 66

TTG ...

LGI ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
506571 69

ATG ...

MTM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
503864 111

CTG ...

LRA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
505317 234

GTG ...

VRA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
505351 129

ATG ...

MRK ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
1056406 57

CTG ...

LEA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
127302 141

ATG ...

MEM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
503311 114

TTG ...

LRL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
504194 75

CTG ...

LCE ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
506914 258

GTG ...

VKV ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
507087 51

ATG ...

MTP ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
504501 ENSMUST00000165307 Anp32e-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

539287 30

ATG ...

MEA ...

Ribo-seq
ATG

strong

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, Liver,
MEF, Neutrophil, NSC,
v6-5
504194 75

CTG ...

LCE ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
504500 90

GTG ...

VSW ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF, Neutrophil,
Spleen_B_cell, v6-5
505263 162

GTG ...

VPC ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell, v6-5
1575701 81

ATT ...

ILF ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
54160 66

TTG ...

LGI ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
893853 39

ATA ...

IIA ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
503864 111

CTG ...

LRA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, MEF
505574 126

TTG ...

LKG ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, MEF
894750 72

AAG ...

KMT ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
972194 96

ATC ...

ISR ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
505105 168

TTG ...

LAV ...

Ribo-seq
TTG

strong

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell, v6-5
972602 183

AAG ...

KSS ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
536610 ENSMUST00000171368 Anp32e-210 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1219354 33

AGG ...

RRG ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
127302 141

ATG ...

MEM ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
504632 84

ATG ...

MKR ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
536609 156

GTG ...

VCA ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF
54306 102

CTG ...

LAH ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF
1219432 54

AAG ...

KLA ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1220778 114

ACG ...

TKM ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1218792 168

ATT ...

ICY ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
535788 126

GTG ...

VGA ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    sORF
    Upstream
MEF, NSC
538665 168

GTG ...

VRA ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF, NSC
504194 75

CTG ...

LCE ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
751517 48

GTG ...

VGV ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    sORF
    Upstream
MEF, v6-5
1221297 81

AAG ...

KRR ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
506311 63

ATG ...

MRM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
539220 138

GTG ...

VDS ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
1220872 87

ATT ...

IHL ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
506074 252

GTG ...

VCA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
750494 54

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
1057122 84

ATG ...

MKR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1730697 69

ATG ...

MTT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
536873 33

GTG ...

VWT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
507096 135

ATG ...

MKM ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
506914 258

GTG ...

VKV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF
507387 120

ATG ...

MRT ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
1220862 123

AAG ...

KMR ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
505317 234

GTG ...

VRA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
506571 69

ATG ...

MTM ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14
1728341 72

ATG ...

MMT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1221547 132

AAG ...

KMR ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
505351 129

ATG ...

MRK ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
504254 222

GTG ...

VCG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
1220315 57

AGG ...

RVG ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
52598 108

ATG ...

MKL ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
52599 ENSMUST00000168106 Anp32e-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

127302 141

ATG ...

MEM ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
54306 102

CTG ...

LAH ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
54160 66

TTG ...

LGI ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
129013 171

GTG ...

VRS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
130694 57

ATG ...

MKL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
52598 108

ATG ...

MKL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
139957 33

GTG ...

VCQ ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
54700 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
1057123 ENSMUST00000168471 Anp32e-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1646817 132

ATG ...

MLR ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1650377 129

CTG ...

LRM ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1057122 84

ATG ...

MKR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil
1648427 123

ATG ...

MTG ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
127615 ENSMUST00000167876 Anp32e-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

131801 216

GTG ...

VTE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Brain
819004 162

CTG ...

LND ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
B_cell
140103 189

TTG ...

LCV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Brain
129013 171

GTG ...

VRS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
3T3
127614 132

TTG ...

LNC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Brain
818264 141

CTG ...

LEF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
B_cell
2955593 ENSMUST00000170125 Anp32e-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

507087 51

ATG ...

MTP ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC

ORFs

73 ORFs
9 known transcripts
144 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

503311 114

TTG...

LRL...

TTG Alternative
Overlapping
sORF
Upstream
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
54160 66

TTG...

LGI...

TTG Alternative
NMD
Overlapping
sORF
Upstream
MEF, Neutrophil, Testis,
BMDC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
strong 3 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
52598 108

ATG...

MKL...

ATG Alternative
CDS
NMD
sORF
InCDS
Overlapping
MEF, Neutrophil, NSC,
v6-5, Brain, Spleen_B_cell,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
506074 252

GTG...

VCA...

GTG Alternative
Overlapping
sORF
Upstream
R1E, Spleen_B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
139957 33

GTG...

VCQ...

GTG InCDS
Overlapping
sORF
NMD
Brain, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
539287 30

ATG...

MEA...

ATG Alternative
sORF
Upstream
3T3, B_cell, Liver,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
strong 7 sORFs_org_Mouse
1219354 33

AGG...

RRG...

AGG Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
127302 141

ATG...

MEM...

ATG Alternative
InCDS
Overlapping
sORF
CDS
NMD
B_cell, BMDC, MEF,
Brain, Spleen_B_cell, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
504632 84

ATG...

MKR...

ATG Alternative
InCDS
Overlapping
sORF
CDS
NMD
B_cell, MEF, Brain,
Spleen_B_cell, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
moderate 3 sORFs_org_Mouse
506611 57

GTG...

VPE...

GTG Alternative
sORF
Upstream
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
506914 258

GTG...

VKV...

GTG Alternative
Overlapping
sORF
Upstream
R1E, E14, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1646817 132

ATG...

MLR...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1057123 ENSMUST00000168471 Anp32e-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
536609 156

GTG...

VCA...

GTG sORF
Upstream
3T3, MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
507387 120

ATG...

MRT...

ATG Alternative
CDS
NMD
sORF
InCDS
Overlapping
MEF, Neutrophil, NSC,
v6-5, Brain, Spleen_B_cell,
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
1057279 39

TTG...

LLV...

TTG InCDS
Overlapping
sORF
NMD
Brain, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
130694 57

ATG...

MKL...

ATG Alternative
CDS
NMD
sORF
InCDS
Overlapping
v6-5, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
54306 102

CTG...

LAH...

CTG Alternative
InCDS
Overlapping
sORF
CDS
NMD
B_cell, E14, MEF,
Brain, Spleen_B_cell, Testis,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
1014742 75

CTG...

LSG...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
7 sORFs_org_Mouse
504194 75

CTG...

LCE...

CTG Alternative
sORF
Upstream
BMDC, E14, 3T3,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1056406 57

CTG...

LEA...

CTG Alternative
InCDS
NMD
Overlapping
sORF
E14, MEF, Neutrophil,
NSC, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1219432 54

AAG...

KLA...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
504500 90

GTG...

VSW...

GTG sORF
Upstream
3T3, MEF, Neutrophil,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
1374765 105

ATG...

MSK...

ATG InCDS
NMD
Overlapping
sORF
E14, MEF, NSC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
507096 135

ATG...

MKM...

ATG Alternative
CDS
NMD
sORF
InCDS
Overlapping
E14, MEF, Neutrophil,
NSC, v6-5, Brain,
Spleen_B_cell, B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
129013 171

GTG...

VRS...

GTG InCDS
Overlapping
sORF
NMD
Brain, Spleen_B_cell, E14,
MEF, Neutrophil, NSC,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
127615 ENSMUST00000167876 Anp32e-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
539220 138

GTG...

VDS...

GTG sORF
Upstream
3T3, E14, R1E,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1220778 114

ACG...

TKM...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
505263 162

GTG...

VPC...

GTG Alternative
sORF
Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
1575701 81

ATT...

ILF...

ATT sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
751517 48

GTG...

VGV...

GTG sORF
Upstream
3T3, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1013657 153

TTG...

LEL...

TTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
8 sORFs_org_Mouse
507148 51

CTG...

LAQ...

CTG Alternative
CDS
NMD
sORF
InCDS
Overlapping
v6-5, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
strong 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
538665 168

GTG...

VRA...

GTG sORF
Upstream
E14, 3T3, MEF,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
506311 63

ATG...

MRM...

ATG Alternative
InCDS
Overlapping
sORF
CDS
NMD
Brain, Spleen_B_cell, v6-5,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1218792 168

ATT...

ICY...

ATT Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
503864 111

CTG...

LRA...

CTG Alternative
sORF
Upstream
3T3, MEF, Neutrophil,
B_cell, BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
127614 132

TTG...

LNC...

TTG InCDS
NMD
Overlapping
sORF
Brain, E14, MEF,
Neutrophil, NSC, v6-5,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
7 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
127615 ENSMUST00000167876 Anp32e-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
818264 141

CTG...

LEF...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, Neutrophil, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
127615 ENSMUST00000167876 Anp32e-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
535788 126

GTG...

VGA...

GTG sORF
Upstream
MEF, NSC, 3T3,
E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
140103 189

TTG...

LCV...

TTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
127615 ENSMUST00000167876 Anp32e-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
819004 162

CTG...

LND...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, MEF, Neutrophil,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
127615 ENSMUST00000167876 Anp32e-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1650377 129

CTG...

LRM...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1057123 ENSMUST00000168471 Anp32e-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
893853 39

ATA...

IIA...

ATA Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1057122 84

ATG...

MKR...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1057123 ENSMUST00000168471 Anp32e-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
507087 51

ATG...

MTP...

ATG Alternative
InCDS
NMD
Overlapping
sORF
MEF, Neutrophil, NSC,
v6-5, Glioma, Liver,
MESC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
2955593 ENSMUST00000170125 Anp32e-207 protein_coding Ribo-seq
weak 1 Johnstone2016
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
1221297 81

AAG...

KRR...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
54700 57

GTG...

VGR...

GTG Alternative
Overlapping
sORF
Upstream
NMD
Spleen_B_cell, MEF, R1E,
Testis, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
52599 ENSMUST00000168106 Anp32e-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
strong 3 sORFs_org_Mouse
131801 216

GTG...

VTE...

GTG sORF
Alternative
InCDS
NMD
Overlapping
Brain, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

127615 ENSMUST00000167876 Anp32e-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
505574 126

TTG...

LKG...

TTG Alternative
sORF
Upstream
Spleen_B_cell, B_cell, BMDC,
MEF, 3T3, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
1648427 123

ATG...

MTG...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1057123 ENSMUST00000168471 Anp32e-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1056491 117

GTG...

VEL...

GTG Alternative
InCDS
NMD
Overlapping
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
504481 63

GTG...

VCV...

GTG Alternative
sORF
Upstream
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1220872 87

ATT...

IHL...

ATT Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
750494 54

GTG...

VVV...

GTG sORF
Upstream
3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
504254 222

GTG...

VCG...

GTG Alternative
Overlapping
sORF
Upstream
Spleen_B_cell, R1E, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
894750 72

AAG...

KMT...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
972194 96

ATC...

ISR...

ATC Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
506571 69

ATG...

MTM...

ATG Alternative
CDS
NMD
sORF
InCDS
Overlapping
v6-5, Brain, Spleen_B_cell,
B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
505317 234

GTG...

VRA...

GTG Alternative
Overlapping
sORF
Upstream
R1E, Spleen_B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1730697 69

ATG...

MTT...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
505351 129

ATG...

MRK...

ATG Alternative
CDS
NMD
sORF
InCDS
Overlapping
MEF, Neutrophil, NSC,
v6-5, Brain, Spleen_B_cell,
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
503312 ENSMUST00000015893 Anp32e-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
536873 33

GTG...

VWT...

GTG Alternative
sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1056606 111

TTG...

LSS...

TTG Alternative
InCDS
NMD
Overlapping
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1013682 120

TTG...

LEV...

TTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
8 sORFs_org_Mouse
505105 168

TTG...

LAV...

TTG Alternative
sORF
Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
strong 6 sORFs_org_Mouse
1014376 33

TTG...

LKN...

TTG InCDS
NMD
Overlapping
sORF
Brain, E14, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
7 sORFs_org_Mouse
1220862 123

AAG...

KMR...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1682708 33

ATG...

MIA...

ATG Alternative
Downstream
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

535789 ENSMUST00000169426 Anp32e-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1728341 72

ATG...

MMT...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1014602 111

CTG...

LAE...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Brain, Liver, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1013562 ENSMUST00000170213 Anp32e-208 nonsense_mediated_decay Ribo-seq
7 sORFs_org_Mouse
1221547 132

AAG...

KMR...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
972602 183

AAG...

KSS...

AAG Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

504501 ENSMUST00000165307 Anp32e-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1220315 57

AGG...

RVG...

AGG Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

536610 ENSMUST00000171368 Anp32e-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5