Transcript 536610

Transcript

ID CARD

MetamORF ID

536610

ENSMUST00000171368

Name

Anp32e-210

Strand

Biotype

protein_coding

Start-end positions

95929325-95945442

CDS Start-stop positions

95929597-95945250

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:66471

Aliases

2810018A15Rik,
AI047746, AI326868, Anp32e,
CPD1, ENSMUSG00000015749, LANP-L,
LANPL, MGI:1913721, mLANP-L,
NCBI:66471, OFF:Anp32e

Chr 3

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1219354	33	AGG ...	RRG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
127302	141	ATG ...	MEM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
504632	84	ATG ...	MKR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
536609	156	GTG ...	VCA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
54306	102	CTG ...	LAH ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF
1219432	54	AAG ...	KLA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1220778	114	ACG ...	TKM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1218792	168	ATT ...	ICY ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
535788	126	GTG ...	VGA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	MEF, NSC
538665	168	GTG ...	VRA ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, MEF, NSC
504194	75	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
751517	48	GTG ...	VGV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
1221297	81	AAG ...	KRR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
506311	63	ATG ...	MRM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
539220	138	GTG ...	VDS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
1220872	87	ATT ...	IHL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
506074	252	GTG ...	VCA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
750494	54	GTG ...	VVV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1057122	84	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1730697	69	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
536873	33	GTG ...	VWT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
507096	135	ATG ...	MKM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
506914	258	GTG ...	VKV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
507387	120	ATG ...	MRT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
1220862	123	AAG ...	KMR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
505317	234	GTG ...	VRA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
506571	69	ATG ...	MTM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1728341	72	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1221547	132	AAG ...	KMR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
505351	129	ATG ...	MRK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
504254	222	GTG ...	VCG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1220315	57	AGG ...	RVG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
52598	108	ATG ...	MKL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF

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