Transcript 1013562

Transcript

ID CARD

MetamORF ID

1013562

ENSMUST00000170213

Name

Anp32e-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

95929541-95945547

CDS Start-stop positions

95929597-95938022

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:66471

Aliases

2810018A15Rik,
AI047746, AI326868, Anp32e,
CPD1, ENSMUSG00000015749, LANP-L,
LANPL, MGI:1913721, mLANP-L,
NCBI:66471, OFF:Anp32e

Chr 3

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54160	66	TTG ...	LGI ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil
52598	108	ATG ...	MKL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative CDS NMD sORF	MEF, Neutrophil, NSC, v6-5
507387	120	ATG ...	MRT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative CDS NMD sORF	MEF, Neutrophil, NSC, v6-5
130694	57	ATG ...	MKL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
1014742	75	CTG ...	LSG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC
1056406	57	CTG ...	LEA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
1374765	105	ATG ...	MSK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, NSC
507096	135	ATG ...	MKM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative CDS NMD sORF	E14, MEF, Neutrophil, NSC, v6-5
129013	171	GTG ...	VRS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
1013657	153	TTG ...	LEL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
507148	51	CTG ...	LAQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
139957	33	GTG ...	VCQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC, v6-5
1057279	39	TTG ...	LLV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC, v6-5
127614	132	TTG ...	LNC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
818264	141	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil
140103	189	TTG ...	LCV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil
506311	63	ATG ...	MRM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
819004	162	CTG ...	LND ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil
507087	51	ATG ...	MTP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC, v6-5
1056491	117	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
131801	216	GTG ...	VTE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil, NSC, v6-5
506571	69	ATG ...	MTM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
505351	129	ATG ...	MRK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative CDS NMD sORF	MEF, Neutrophil, NSC, v6-5
1056606	111	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
1013682	120	TTG ...	LEV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
1014376	33	TTG ...	LKN ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
54700	57	GTG ...	VGR ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil
54306	102	CTG ...	LAH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative CDS NMD sORF	MEF, Neutrophil, NSC, v6-5
1014602	111	CTG ...	LAE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, v6-5
127302	141	ATG ...	MEM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative CDS NMD sORF	MEF, Neutrophil, NSC, v6-5
504632	84	ATG ...	MKR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative CDS NMD sORF	MEF, Neutrophil, v6-5

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