Gene NCBI:66462 | MetamORF

Gene

ID CARD

NCBI:66462

Aliases

2810428I15Rik
ENSMUSG00000058833, MGI:1913712, NCBI:66462
OFF:Rex1bd, Rex1bd

Chromosome

Transcripts

41 ORFs
8 known transcripts
101 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

602761

ENSMUST00000135773

2810428I15Rik-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
603793	51	ATG ...	MQE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
81464	81	GTG ...	VAL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
79761	72	TTG ...	LQV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
5609	39	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
81493	108	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
79719	120	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
81340	216	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
416731	54	ATT ...	IQQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
604610	81	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
79126	162	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
80114	63	GTG ...	VQR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, v6-5
80242	66	GTG ...	VMG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
1266078	75	ACG ...	TPR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
78396	69	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
79425	75	CTG ...	LLQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
249087	45	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
609857	30	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
82190	138	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
80900	30	ATG ...	MNA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
78463	66	CTG ...	LVQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
242463	99	ATG ...	MAP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
80951	84	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
607730	63	CTG ...	LVQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
78880	171	GTG ...	VHE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
241287	72	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC, v6-5
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
80904	48	GTG ...	VSE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, v6-5

78397

ENSMUST00000132107

2810428I15Rik-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
604610	81	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
81340	216	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
241287	72	GTG ...	VSI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
82190	138	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
80114	63	GTG ...	VQR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
81493	108	TTG ...	LAG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
242463	99	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
603793	51	ATG ...	MQE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
881499	96	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
80951	84	GTG ...	VLA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1823752	84	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
245558	171	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
245730	42	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
79126	162	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
245379	129	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
79719	120	GTG ...	VEA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
249087	45	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
242307	165	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1821010	102	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
80900	30	ATG ...	MNA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
78396	69	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
607730	63	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
82012	126	TTG ...	LAV ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
78880	171	GTG ...	VHE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
78463	66	CTG ...	LVQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis

250456

ENSMUST00000075175

2810428I15Rik-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
429848	90	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Spleen_B_cell
250455	123	CTG ...	LLQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E
252978	120	CTG ...	LQT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, NSC, R1E
615420	165	TTG ...	LTA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Liver, MEF

754123

ENSMUST00000143598

2810428I15Rik-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
79719	120	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
79761	72	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
79425	75	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
80242	66	GTG ...	VMG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
81464	81	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
81340	216	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
82012	126	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
5609	39	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
79126	162	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
78880	171	GTG ...	VHE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
81493	108	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain

880781

ENSMUST00000138196

2810428I15Rik-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
881499	96	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver

5610

ENSMUST00000133683

2810428I15Rik-204

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
80242	66	GTG ...	VMG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
80904	48	GTG ...	VSE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
81464	81	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
79761	72	TTG ...	LQV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
80951	84	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
81340	216	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
78396	69	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
79425	75	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
81493	108	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
78880	171	GTG ...	VHE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
79719	120	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1446105	60	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
82012	126	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
79126	162	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
5609	39	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor

416732

ENSMUST00000128620

2810428I15Rik-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
80114	63	GTG ...	VQR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
78463	66	CTG ...	LVQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
416731	54	ATT ...	IQQ ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
80900	30	ATG ...	MNA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver

80906

ENSMUST00000136913

2810428I15Rik-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
252978	120	CTG ...	LQT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
80900	30	ATG ...	MNA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
5609	39	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Testis
250455	123	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, NSC
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

ORFs

41 ORFs
8 known transcripts
101 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

603793

ATG...

MQE...

ATG

Intronic
sORF

3T3, E14, v6-5,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

81464

GTG...

VAL...

GTG

Intronic
sORF
ncRNA

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, Liver, Testis,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

604610

GTG...

VGR...

GTG

Intronic
sORF

R1E, 3T3, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

79761

TTG...

LQV...

TTG

Intronic
sORF
ncRNA

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
B_cell, Brain, Liver,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

429848

TTG...

LTA...

TTG

Alternative
Overlapping
sORF
Upstream

E14, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
250456	ENSMUST00000075175	2810428I15Rik-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

79719

120

GTG...

VEA...

GTG

Intronic
sORF
ncRNA

Brain, E14, Liver,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

81340

216

CTG...

LLS...

CTG

Intronic
sORF
ncRNA

Brain, R1E, Testis,
3T3, E14, v6-5,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		4	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

5609

CTG...

LQE...

CTG

Intronic
sORF
Alternative
Downstream
ncRNA

MEF, B_cell, Testis,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
80906	ENSMUST00000136913	2810428I15Rik-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse

241287

GTG...

VSI...

GTG

Intronic
sORF

Brain, R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

250455

123

CTG...

LLQ...

CTG

InCDS
Overlapping
sORF
Alternative

B_cell, Brain, E14,
MEF, R1E, 3T3,
Liver, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
250456	ENSMUST00000075175	2810428I15Rik-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
80906	ENSMUST00000136913	2810428I15Rik-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

82190

138

CTG...

LEQ...

CTG

Intronic
sORF

R1E, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

81493

108

TTG...

LAG...

TTG

Intronic
sORF
ncRNA

E14, R1E, Testis,
Liver, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

80114

GTG...

VQR...

GTG

Intronic
sORF

Brain, R1E, Testis,
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		3	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		7	sORFs_org_Mouse
416732	ENSMUST00000128620	2810428I15Rik-202	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

81247

ATG...

MTS...

ATG

Intronic
sORF
InCDS
Overlapping

BMDC, Liver, Brain,
R1E, Testis, 3T3,
E14, NSC, v6-5,
Glioma, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
880781	ENSMUST00000138196	2810428I15Rik-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
416732	ENSMUST00000128620	2810428I15Rik-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
80906	ENSMUST00000136913	2810428I15Rik-206	protein_coding	Ribo-seq	moderate	1	Johnstone2016

416731

ATT...

IQQ...

ATT

Intronic
sORF

E14, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
416732	ENSMUST00000128620	2810428I15Rik-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

242463

ATG...

MAP...

ATG

Intronic
sORF

Brain, R1E, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

881499

CTG...

LPR...

CTG

Intronic
sORF

Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
880781	ENSMUST00000138196	2810428I15Rik-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

79425

CTG...

LLQ...

CTG

Intronic
sORF
ncRNA

B_cell, 3T3, E14,
MEF, Neutrophil, NSC,
v6-5, Brain, Liver,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

79126

162

GTG...

VTQ...

GTG

Intronic
sORF
ncRNA

3T3, E14, Brain,
R1E, Testis, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

80242

GTG...

VMG...

GTG

ncRNA
sORF
Intronic

Brain, Liver, Testis,
B_cell, 3T3, E14,
MEF, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse

80904

GTG...

VSE...

GTG

ncRNA
sORF
Intronic

Brain, Liver, Testis,
3T3, E14, MEF,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1266078

ACG...

TPR...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

82001

GTG...

VVS...

GTG

Intronic
sORF

Liver, Brain, BMDC,
R1E, Testis, E14,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
880781	ENSMUST00000138196	2810428I15Rik-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
416732	ENSMUST00000128620	2810428I15Rik-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

80951

GTG...

VLA...

GTG

Intronic
sORF
ncRNA

R1E, Testis, Liver,
Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

78396

GTG...

VRS...

GTG

Intronic
sORF
ncRNA

E14, Neutrophil, Liver,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1823752

CTG...

LLV...

CTG

Intronic
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

252978

120

CTG...

LQT...

CTG

InCDS
Overlapping
sORF
Alternative

B_cell, MEF, NSC,
R1E, 3T3, Brain,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
250456	ENSMUST00000075175	2810428I15Rik-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
80906	ENSMUST00000136913	2810428I15Rik-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

245558

171

GTG...

VGL...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

245730

ATG...

MGS...

ATG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

245379

129

GTG...

VAG...

GTG

Intronic
sORF

Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

249087

CTG...

LQS...

CTG

Intronic
sORF

3T3, E14, v6-5,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

609857

GTG...

VLL...

GTG

Intronic
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

78463

CTG...

LVQ...

CTG

Intronic
sORF

Liver, 3T3, Brain,
E14, MEF, Neutrophil,
v6-5, BMDC, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416732	ENSMUST00000128620	2810428I15Rik-202	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		8	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		4	sORFs_org_Mouse

80900

ATG...

MNA...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, v6-5, Liver,
Glioma, MESC, BMDC,
Brain, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
416732	ENSMUST00000128620	2810428I15Rik-202	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
80906	ENSMUST00000136913	2810428I15Rik-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

78880

171

GTG...

VHE...

GTG

ncRNA
sORF
Intronic

Liver, 3T3, E14,
Brain, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1446105

CTG...

LQE...

CTG

ncRNA
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

82012

126

TTG...

LAV...

TTG

ncRNA
sORF
Intronic

Liver, Brain, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5610	ENSMUST00000133683	2810428I15Rik-204	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
754123	ENSMUST00000143598	2810428I15Rik-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

607730

CTG...

LVQ...

CTG

Intronic
sORF

3T3, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
602761	ENSMUST00000135773	2810428I15Rik-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

242307

165

CTG...

LGE...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

615420

165

TTG...

LTA...

TTG

Overlapping
sORF
Upstream

3T3, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
250456	ENSMUST00000075175	2810428I15Rik-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1821010

102

TTG...

LWT...

TTG

Intronic
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
78397	ENSMUST00000132107	2810428I15Rik-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

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