Transcript 602761

Transcript

ID CARD

MetamORF ID

602761

ENSMUST00000135773

Name

2810428I15Rik-205

Strand

Biotype

retained_intron

Start-end positions

70504292-70506721

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:66462

Aliases

2810428I15Rik,
ENSMUSG00000058833, MGI:1913712, NCBI:66462,
OFF:Rex1bd, Rex1bd

Chr 8

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
603793	51	ATG ...	MQE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
81464	81	GTG ...	VAL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
79761	72	TTG ...	LQV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
5609	39	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
81493	108	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
79719	120	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
81340	216	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
416731	54	ATT ...	IQQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
604610	81	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
79126	162	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
80114	63	GTG ...	VQR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, v6-5
80242	66	GTG ...	VMG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
1266078	75	ACG ...	TPR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
78396	69	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
79425	75	CTG ...	LLQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
249087	45	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
609857	30	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
82190	138	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
80900	30	ATG ...	MNA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
78463	66	CTG ...	LVQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
242463	99	ATG ...	MAP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
80951	84	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
607730	63	CTG ...	LVQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
78880	171	GTG ...	VHE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
241287	72	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC, v6-5
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
80904	48	GTG ...	VSE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, v6-5

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