Transcript 78397 | MetamORF

Transcript

ID CARD

MetamORF ID

78397

ENSMUST00000132107

Name

2810428I15Rik-203

Strand

Biotype

retained_intron

Start-end positions

70505245-70506699

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:66462

Aliases

2810428I15Rik,
ENSMUSG00000058833, MGI:1913712, NCBI:66462,
OFF:Rex1bd, Rex1bd

Chr 8

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
604610	81	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
81340	216	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
241287	72	GTG ...	VSI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
82190	138	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
80114	63	GTG ...	VQR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
81493	108	TTG ...	LAG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
242463	99	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
603793	51	ATG ...	MQE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
881499	96	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
80951	84	GTG ...	VLA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1823752	84	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
81247	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
245558	171	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
245730	42	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
79126	162	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
245379	129	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
79719	120	GTG ...	VEA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
82001	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
249087	45	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
242307	165	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1821010	102	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
80900	30	ATG ...	MNA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
78396	69	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
607730	63	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
82012	126	TTG ...	LAV ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
78880	171	GTG ...	VHE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
78463	66	CTG ...	LVQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis

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