Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:59026

Aliases

5430439H10Rik
Arf-bp1, AU041296, C430014N20Rik
C80292, ENSMUSG00000025261, Gm1718
Huwe1, Ib772, LASU1
MGI:1926884, Mule, NCBI:59026
OFF:Huwe1, Ureb1

Chromosome

X

Transcripts

366 ORFs
22 known transcripts
615 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

7308 ENSMUST00000150426 Huwe1-219 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1592850 57

ATG ...

MIV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1591633 63

ATG ...

MRM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1592765 48

ATG ...

MYV ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
281425 111

GTG ...

VGN ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14
1118058 48

ATG ...

MSC ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1118096 159

CTG ...

LTL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
765062 63

CTG ...

LDD ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14
281759 87

CTG ...

LED ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil,
v6-5
1592942 78

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
7353 78

ATG ...

MKV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor, v6-5
275854 42

ATG ...

MVL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, v6-5
1077394 78

CTG ...

LID ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, v6-5
1118590 189

TTG ...

LMV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
1117671 33

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
279536 147

TTG ...

LDE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, v6-5
7307 81

ATG ...

MMK ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor, v6-5
283404 54

ATG ...

MMT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, v6-5
417883 81

AGG ...

RSD ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
C2C12
1593305 111

ATG ...

MRR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1591795 117

CTG ...

LRM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1592464 45

ATG ...

MKR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
278092 51

ATG ...

MTT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, v6-5
7355 60

ATG ...

MKM ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Skin_tumor,
v6-5
1117887 66

TTG ...

LLE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
7359 72

GTG ...

VKK ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Skin_tumor,
v6-5
280701 36

CTG ...

LRW ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, v6-5
1592524 60

GTG ...

VCI ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
88244 66

CTG ...

LLD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
282496 153

CTG ...

LGS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, v6-5
275480 ENSMUST00000130243 Huwe1-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

278007 198

ATG ...

MEH ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
443421 63

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
1590783 30

GTG ...

VVK ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
281984 33

ATG ...

MTN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
279352 69

ATG ...

MLD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
442796 99

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
283188 78

GTG ...

VIK ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell
275479 102

TTG ...

LYH ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
275804 105

CTG ...

LIC ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain
283862 60

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain
1076578 96

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
279133 78

TTG ...

LYN ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil,
NSC
278269 84

ATG ...

MEF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
89590 66

TTG ...

LIE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
283600 126

CTG ...

LLF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain
278695 105

CTG ...

LAH ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain
281668 33

CTG ...

LYL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
88276 102

TTG ...

LQE ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF,
Neutrophil, NSC
278618 228

ATG ...

MES ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
764794 42

ATG ...

MQI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
283467 69

ATG ...

MAF ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, NSC
276256 123

GTG ...

VSY ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
277140 267

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1118613 57

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
281928 54

TTG ...

LVD ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil
276675 111

TTG ...

LFI ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
1279787 192

AGG ...

REV ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
7175 30

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1117993 81

TTG ...

LPQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
442905 33

TTG ...

LEQ ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Spleen_B_cell
281356 258

TTG ...

LDR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
443035 111

GTG ...

VEV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
284652 102

TTG ...

LCR ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
7094 66

ATG ...

MYL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
279697 42

TTG ...

LDL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Spleen_B_cell
418049 177

GTG ...

VAI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
441482 117

CTG ...

LSV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
278153 36

CTG ...

LFR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
279264 186

CTG ...

LDV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1118419 63

CTG ...

LEL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
277973 75

CTG ...

LDM ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
278216 36

TTG ...

LQN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
278632 69

TTG ...

LEL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1118958 75

CTG ...

LYW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC
277724 72

TTG ...

LTV ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
281893 261

CTG ...

LLD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
278098 123

TTG ...

LER ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Spleen_B_cell
7237 48

ATG ...

MAL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain
276914 72

ATG ...

MPF ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain
278674 96

GTG ...

VVD ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil
282761 33

TTG ...

LYV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
277660 69

ATG ...

MAA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
280346 78

GTG ...

VGI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
89483 57

TTG ...

LPV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
766032 33

CTG ...

LEL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
1335743 78

TTG ...

LYF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1277023 69

AAG ...

KQA ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1591205 39

CTG ...

LDV ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    NMD
    sORF
MEF
1076574 90

CTG ...

LLN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
Neutrophil
284005 126

CTG ...

LTF ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, MEF,
v6-5
1754040 90

TTG ...

LMT ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    NMD
    sORF
MEF
1279376 60

AGG ...

RKK ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1753640 57

CTG ...

LCL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
MEF
1591480 30

CTG ...

LIQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
MEF
280957 156

GTG ...

VIR ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    NMD
    sORF
B_cell, Brain, E14,
Neutrophil, v6-5
275456 183

TTG ...

LCH ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    NMD
    sORF
B_cell, Brain, E14,
Neutrophil, v6-5
1278195 33

AGG ...

RYD ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
276342 141

CTG ...

LSK ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    NMD
    sORF
B_cell, Brain, E14,
Neutrophil
1754484 51

TTG ...

LYF ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
MEF
1277735 93

AGG ...

RKD ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1077687 90

TTG ...

LSV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
E14, Neutrophil
276130 96

TTG ...

LGL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, Neutrophil
282498 60

CTG ...

LGQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    NMD
    sORF
B_cell, Brain, Neutrophil
1117508 162

GTG ...

VGS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
280387 129

TTG ...

LKL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
Brain, E14
1753476 33

GTG ...

VNL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    NMD
    sORF
MEF
1277280 99

AAG ...

KRR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1076674 87

TTG ...

LNT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
Neutrophil
1276862 51

CTG ...

LRD ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    NMD
    sORF
E14, NSC
766735 30

TTG ...

LFT ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver, MEF
1280086 123

ATC ...

ISV ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    NMD
    sORF
E14
282151 192

CTG ...

LAI ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    NMD
    sORF
B_cell, Brain, E14,
Neutrophil, v6-5
280180 81

CTG ...

LSK ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, Neutrophil
89297 147

TTG ...

LNA ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, Testis
1525222 105

TTG ...

LNL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
NSC
629225 51

GTG ...

VAH ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    NMD
    sORF
B_cell, E14, NSC
1754535 30

CTG ...

LPG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    NMD
    sORF
MEF
1279873 252

AAG ...

KNL ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1076578 96

CTG ...

LGS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    NMD
    sORF
E14, Neutrophil
284565 246

CTG ...

LWN ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, v6-5
1526490 57

CTG ...

LFL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
NSC
281814 108

TTG ...

LVT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
Brain
1277056 75

AAG ...

KKK ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1754056 87

ATG ...

MTA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    NMD
    sORF
MEF
281358 117

CTG ...

LAP ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, MEF,
v6-5
1277002 108

GTG ...

VVE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1754220 36

TTG ...

LIL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
MEF
277917 171

TTG ...

LSN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
Brain
88267 63

CTG ...

LKH ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    NMD
    sORF
Brain, E14, Testis,
v6-5
1277109 69

AAG ...

KYP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1279582 48

ATC ...

IFL ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    NMD
    sORF
E14
88714 48

CTG ...

LQK ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    NMD
    sORF
Brain, MEF, Testis,
v6-5
281996 183

GTG ...

VES ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
Brain
1278004 123

ACG ...

TFF ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

281996 183

GTG ...

VES ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    NMD
    sORF
E14, Neutrophil, NSC,
v6-5
1278520 48

ATT ...

ILP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    NMD
    sORF
E14
1117259 114

ATG ...

MLQ ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
631047 201

TTG ...

LEE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
v6-5
1118312 111

CTG ...

LQK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
v6-5
1278433 66

AGG ...

RPC ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1118310 144

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
v6-5
281814 108

TTG ...

LVT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1280189 156

ATT ...

IQK ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    NMD
    sORF
E14
1526157 33

CTG ...

LLQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
NSC
631427 219

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
v6-5
1335610 63

TTG ...

LTF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1278456 216

AAG ...

KKS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1118098 87

ATG ...

MRR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
1280328 36

AGG ...

RLL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
277917 171

TTG ...

LSN ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    NMD
    sORF
E14, NSC, v6-5
1277494 165

AAG ...

KPS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1279857 48

AGG ...

RNV ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1280040 78

AAG ...

KRK ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1118846 75

CTG ...

LSR ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    NMD
    sORF
E14, MEF, NSC,
v6-5
1118965 57

TTG ...

LVP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
1117475 33

ATG ...

MKL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    NMD
    sORF
E14, NSC, v6-5
1117478 93

GTG ...

VKM ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
1277154 117

AGG ...

RSN ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1279023 33

ATA ...

IQQ ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    NMD
    sORF
E14
1279965 102

AGG ...

RLP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    NMD
    sORF
E14
1525591 45

CTG ...

LPS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    NMD
    sORF
NSC
1278332 51

ATC ...

IYS ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    NMD
    sORF
E14
1118775 150

ATG ...

MVL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
1118051 138

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    NMD
    sORF
E14, v6-5
278799 ENSMUST00000026292 Huwe1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

285142 180

ATG ...

MMS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
275854 42

ATG ...

MVL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1573481 87

GTG ...

VTG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
444376 72

GTG ...

VQE ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Spleen_B_cell
443010 111

CTG ...

LTP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1593855 126

ATG ...

MKR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1574499 30

CTG ...

LLW ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
631202 60

GTG ...

VTM ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF
444297 120

GTG ...

VLQ ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Liver,
MEF, Neutrophil, Spleen_B_cell
765131 33

CTG ...

LRC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
282280 66

CTG ...

LDK ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
278269 84

ATG ...

MEF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
7307 81

ATG ...

MMK ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
444408 126

GTG ...

VLV ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Liver,
MEF, Neutrophil, Spleen_B_cell
1574077 30

TTG ...

LLM ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1591795 117

CTG ...

LRM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1594092 138

ATG ...

MIV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
285391 177

ATG ...

MSN ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
444220 153

CTG ...

LGS ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF,
NSC, Spleen_B_cell
283404 54

ATG ...

MMT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
7353 78

ATG ...

MKV ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1119610 51

TTG ...

LNF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1591633 63

ATG ...

MRM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1575220 93

CTG ...

LPQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
283862 60

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
443912 33

CTG ...

LPF ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Liver, MEF,
Spleen_B_cell
443829 180

TTG ...

LVA ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
442807 114

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1594370 81

TTG ...

LNF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
629343 69

ATG ...

MSA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
764794 42

ATG ...

MQI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1592942 78

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
444535 39

CTG ...

LVL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Spleen_B_cell
7202 51

CTG ...

LYR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
279352 69

ATG ...

MLD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1574057 111

ATG ...

MPC ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
444007 177

GTG ...

VAS ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
7175 30

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
281271 36

GTG ...

VAS ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
443621 36

GTG ...

VLP ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Liver, MEF,
Spleen_B_cell
7359 72

GTG ...

VKK ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1573141 51

TTG ...

LLE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
764781 33

GTG ...

VLQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1281382 81

AGG ...

RKF ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
766245 177

GTG ...

VSY ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1593305 111

ATG ...

MRR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
443708 54

GTG ...

VLG ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell
1573929 93

ATG ...

MQK ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
276256 123

GTG ...

VSY ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1573781 126

TTG ...

LSW ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
635727 159

GTG ...

VSS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1574046 90

CTG ...

LVT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
7355 60

ATG ...

MKM ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1592850 57

ATG ...

MIV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1592170 30

ATG ...

MLA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
632648 183

GTG ...

VKV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
629690 54

ATG ...

MYL ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF
764813 33

GTG ...

VSC ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
443738 63

CTG ...

LRR ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, Liver,
MEF, Spleen_B_cell
1120495 57

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1594318 144

ATG ...

MRM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
633968 144

ATG ...

MSS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
444045 81

CTG ...

LSA ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Liver, MEF,
NSC, Spleen_B_cell
766434 30

CTG ...

LTL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
284412 87

TTG ...

LME ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1593950 99

GTG ...

VQP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
441084 60

CTG ...

LVR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
631106 48

TTG ...

LKT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
444623 129

GTG ...

VEV ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Liver,
MEF, NSC, Spleen_B_cell
764776 165

TTG ...

LRH ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
443838 117

CTG ...

LGS ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Liver,
MEF, NSC, Spleen_B_cell
1594395 192

ATG ...

MRR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
443875 33

ATG ...

MTM ...

Ribo-seq
ATG

17 sORFs_org_Mouse
    sORF
    Upstream
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell
1573958 81

ATG ...

MKP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
280701 36

CTG ...

LRW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
287104 132

TTG ...

LAS ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
1754886 42

CTG ...

LPW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
7503 45

ATG ...

MAL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
444181 51

TTG ...

LGF ...

Ribo-seq
TTG

12 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell
1117608 69

GTG ...

VQP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1594251 66

TTG ...

LPG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1594156 159

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1594332 72

ATG ...

MQI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
442355 138

TTG ...

LGR ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
767804 54

CTG ...

LRC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
278092 51

ATG ...

MTT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
443924 195

GTG ...

VAI ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
443632 87

TTG ...

LVR ...

Ribo-seq
TTG

13 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
278798 45

ATG ...

MDF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
634049 147

TTG ...

LMS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1594436 198

CTG ...

LRM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
7095 ENSMUST00000131786 Huwe1-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

283600 126

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
278695 105

CTG ...

LAH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
88276 102

TTG ...

LQE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
89590 66

TTG ...

LIE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
88284 57

ATG ...

MFI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
442796 99

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
276256 123

GTG ...

VSY ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
278098 123

TTG ...

LER ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1276857 273

GTG ...

VLQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
278007 198

ATG ...

MEH ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1279756 240

TTG ...

LVR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
284412 87

TTG ...

LME ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
441084 60

CTG ...

LVR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
765527 48

CTG ...

LRR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
418049 177

GTG ...

VAI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1279308 150

AAG ...

KFL ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
276675 111

TTG ...

LFI ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1574731 87

TTG ...

LNF ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
277140 267

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
281356 258

TTG ...

LDR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
282280 66

CTG ...

LDK ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
443035 111

GTG ...

VEV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
7237 48

ATG ...

MAL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Skin_tumor
277660 69

ATG ...

MAA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1279645 204

TTG ...

LGF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1280021 30

ATT ...

ICV ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
927020 234

AGG ...

RKF ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
279697 42

TTG ...

LDL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
927756 279

GTG ...

VLV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
283188 78

GTG ...

VIK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
926747 186

ATG ...

MTM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
281893 261

CTG ...

LLD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
279352 69

ATG ...

MLD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
279264 186

CTG ...

LDV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
7094 66

ATG ...

MYL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor
443421 63

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
284652 102

TTG ...

LCR ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, R1E
277724 72

TTG ...

LTV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
278269 84

ATG ...

MEF ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E
275479 102

TTG ...

LYH ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
283862 60

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
7175 30

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Skin_tumor
441590 135

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
281612 237

CTG ...

LAD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
89483 57

TTG ...

LPV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
281984 33

ATG ...

MTN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
277973 75

CTG ...

LDM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
278618 228

ATG ...

MES ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
1277468 81

ACG ...

TGW ...

Ribo-seq
ACG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
E14
278674 96

GTG ...

VVD ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E
278354 ENSMUST00000139386 Huwe1-214 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

278353 57

GTG ...

VGM ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E, v6-5
441311 153

TTG ...

LLF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
1116798 42

GTG ...

VRL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
1116815 36

TTG ...

LCV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
441084 60

CTG ...

LVR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
1116572 33

CTG ...

LSC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
441279 162

TTG ...

LVA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
282389 30

ATG ...

MLA ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
441458 216

ATG ...

MRE ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
281984 33

ATG ...

MTN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
441843 162

TTG ...

LGF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
444328 51

GTG ...

VRF ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Spleen_B_cell, v6-5
443035 111

GTG ...

VEV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Spleen_B_cell, v6-5
442355 138

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
1279565 147

AGG ...

RYR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
277660 69

ATG ...

MAA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
443524 177

GTG ...

VLR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
442796 99

CTG ...

LGS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Spleen_B_cell
441628 162

GTG ...

VRH ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
442610 63

TTG ...

LAT ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
444195 33

GTG ...

VLP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Spleen_B_cell
444518 60

CTG ...

LRR ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
MEF, Spleen_B_cell
441590 135

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
629024 51

ATG ...

MRG ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, R1E,
v6-5
444278 69

GTG ...

VQE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF,
Spleen_B_cell
443421 63

CTG ...

LSA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Spleen_B_cell
443253 159

GTG ...

VAS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
442569 132

GTG ...

VRA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
1277884 102

CTG ...

LHL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
418049 177

GTG ...

VAI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell, v6-5
88245 ENSMUST00000139909 Huwe1-215 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

281425 111

GTG ...

VGN ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, v6-5
1118409 93

CTG ...

LSS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
88385 159

CTG ...

LSS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Testis,
v6-5
1116689 75

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1077503 129

TTG ...

LRD ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, v6-5
1077276 81

TTG ...

LAE ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil
281209 156

GTG ...

VPI ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil,
v6-5
765062 63

CTG ...

LDD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
88244 66

CTG ...

LLD ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Testis, v6-5
283689 138

CTG ...

LEF ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil,
v6-5
277559 195

TTG ...

LLG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
284916 ENSMUST00000147666 Huwe1-216 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

282280 66

CTG ...

LDK ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF
282761 33

TTG ...

LYV ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF
442905 33

TTG ...

LEQ ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
MEF
287316 204

TTG ...

LLI ...

Ribo-seq
TTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, v6-5
286630 243

CTG ...

LKM ...

Ribo-seq
CTG

11 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
R1E, v6-5
632675 33

TTG ...

LSP ...

Ribo-seq
TTG

weak

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF,
NSC
285746 228

TTG ...

LAV ...

Ribo-seq
TTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, v6-5
88284 57

ATG ...

MFI ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, MEF,
NSC
281893 261

CTG ...

LLD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
281984 33

ATG ...

MTN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
7175 30

TTG ...

LDL ...

Ribo-seq
TTG

strong

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF,
NSC
286179 174

CTG ...

LYS ...

Ribo-seq
CTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
278269 84

ATG ...

MEF ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF,
Neutrophil
1525257 36

CTG ...

LQS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
441482 117

CTG ...

LSV ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF
766148 33

TTG ...

LFI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
765527 48

CTG ...

LRR ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, MEF
287320 219

TTG ...

LNF ...

Ribo-seq
TTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, v6-5
286181 30

CTG ...

LTR ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell, v6-5
926747 186

ATG ...

MTM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
89423 30

GTG ...

VAV ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, MEF
280346 78

GTG ...

VGI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
281612 237

CTG ...

LAD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
284915 114

CTG ...

LAV ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell
285155 153

TTG ...

LTT ...

Ribo-seq
TTG

14 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
7094 66

ATG ...

MYL ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, NSC
631236 39

TTG ...

LST ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF
1525572 57

TTG ...

LFF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
277660 69

ATG ...

MAA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
89957 63

ATG ...

MFI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
285000 294

GTG ...

VEN ...

Ribo-seq
GTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E
767429 33

ATG ...

MTN ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E
631451 72

GTG ...

VTK ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, NSC
88844 57

CTG ...

LNF ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, NSC
927998 93

AGG ...

RFS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
285216 117

GTG ...

VLA ...

Ribo-seq
GTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
279352 69

ATG ...

MLD ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF,
Neutrophil
285492 141

TTG ...

LAS ...

Ribo-seq
TTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell
277140 267

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
276256 123

GTG ...

VSY ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF,
Neutrophil
281356 258

TTG ...

LDR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
275804 105

CTG ...

LIC ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF
284412 87

TTG ...

LME ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, MEF
286977 120

GTG ...

VVL ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell
7203 ENSMUST00000112622 Huwe1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1119916 87

TTG ...

LTL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
631106 48

TTG ...

LKT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1280445 45

AGG ...

RQW ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
629690 54

ATG ...

MYL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1118825 144

CTG ...

LFK ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1118058 48

ATG ...

MSC ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1594229 81

CTG ...

LLA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1594332 72

ATG ...

MQI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1754056 87

ATG ...

MTA ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1594395 192

ATG ...

MRR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1391912 42

GTG ...

VVF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1120148 195

TTG ...

LDS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
633968 144

ATG ...

MSS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
631047 201

TTG ...

LEE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1526721 33

TTG ...

LQN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1590529 39

CTG ...

LGL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
635727 159

GTG ...

VSS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1594156 159

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1119804 72

CTG ...

LYW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1120468 54

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1574057 111

ATG ...

MPC ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1526894 93

ATG ...

MFT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC
1120008 117

ATG ...

MTT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
1120777 168

ATG ...

MRE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
285142 180

ATG ...

MMS ...

Ribo-seq
ATG

8 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, R1E, v6-5
1120495 57

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1591476 51

ATG ...

MNL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1277075 54

ATC ...

IWC ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
629225 51

GTG ...

VAH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
283467 69

ATG ...

MAF ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
276914 72

ATG ...

MPF ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
926795 69

ATA ...

IHL ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1280014 36

CTG ...

LAS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1573929 93

ATG ...

MQK ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
765131 33

CTG ...

LRC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
1279363 39

AAG ...

KNW ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1526445 39

CTG ...

LAL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
634121 96

GTG ...

VAH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
631202 60

GTG ...

VTM ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1593452 54

ATG ...

MMN ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1120272 123

GTG ...

VGF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
635551 99

CTG ...

LSE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1594089 63

CTG ...

LEL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1277397 126

AAG ...

KQG ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1833767 42

ATG ...

MWT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, R1E
1573958 81

ATG ...

MKP ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1116846 48

GTG ...

VGH ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
7503 45

ATG ...

MAL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Skin_tumor
7094 66

ATG ...

MYL ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
632648 183

GTG ...

VKV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1118402 72

ATG ...

MEH ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1590582 63

CTG ...

LNS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
285391 177

ATG ...

MSN ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, Neutrophil, R1E,
v6-5
282280 66

CTG ...

LDK ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
276256 123

GTG ...

VSY ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
279352 69

ATG ...

MLD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
284412 87

TTG ...

LME ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1526850 117

CTG ...

LPI ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
631231 42

CTG ...

LMA ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1594251 66

TTG ...

LPG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
287104 132

TTG ...

LAS ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
Neutrophil, R1E, v6-5
1594092 138

ATG ...

MIV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
278269 84

ATG ...

MEF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1527142 39

TTG ...

LDL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1594370 81

TTG ...

LNF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
278798 45

ATG ...

MDF ...

Ribo-seq
ATG

strong

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1594318 144

ATG ...

MRM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1280173 30

ATG ...

MFK ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1594436 198

CTG ...

LRM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
629343 69

ATG ...

MSA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1336298 90

ATG ...

MAA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
1593615 78

CTG ...

LAD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1592170 30

ATG ...

MLA ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1594109 144

GTG ...

VRV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
442807 114

ATG ...

MLT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
1593950 99

GTG ...

VQP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
634049 147

TTG ...

LMS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
7202 51

CTG ...

LYR ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor
1590610 75

ATG ...

MRP ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1120450 183

GTG ...

VYS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1120714 123

CTG ...

LYM ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1594429 75

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
281271 36

GTG ...

VAS ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1120553 171

TTG ...

LMR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1593855 126

ATG ...

MKR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1590931 42

TTG ...

LYS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
628942 102

CTG ...

LNY ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
631427 219

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1281298 96

AGG ...

RYD ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
276249 ENSMUST00000139245 Huwe1-213 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1280173 30

ATG ...

MFK ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1279432 72

AAG ...

KIL ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1118402 72

ATG ...

MEH ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
E14, NSC, v6-5
276248 69

GTG ...

VDQ ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, MEF
1277785 30

CTG ...

LSY ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
E14, NSC
1277339 78

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1278149 42

AGG ...

RRN ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1278809 60

AGG ...

RER ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1279382 36

AGG ...

RGM ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1279715 51

ATC ...

ICP ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1116846 48

GTG ...

VGH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1276760 99

ATG ...

MWT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1279789 51

AGG ...

RRK ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1279106 114

AGG ...

RNR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
634522 ENSMUST00000149344 Huwe1-217 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

443421 63

CTG ...

LSA ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
441843 162

TTG ...

LGF ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
443253 159

GTG ...

VAS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
441279 162

TTG ...

LVA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
418049 177

GTG ...

VAI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
442355 138

TTG ...

LGR ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
443035 111

GTG ...

VEV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
442796 99

CTG ...

LGS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
634521 198

GTG ...

VAS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
441590 135

CTG ...

LGS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
634789 201

TTG ...

LVA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
442610 63

TTG ...

LAT ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
88285 ENSMUST00000156616 Huwe1-223 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

927756 279

GTG ...

VLV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
BMDC
89423 30

GTG ...

VAV ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    sORF
Testis
927020 234

AGG ...

RKF ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
BMDC
88284 57

ATG ...

MFI ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    sORF
BMDC, MEF, Testis
89957 63

ATG ...

MFI ...

Ribo-seq
ATG

13 sORFs_org_Mouse
    sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
441482 117

CTG ...

LSV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
MEF
631451 72

GTG ...

VTK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
v6-5
926747 186

ATG ...

MTM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
BMDC
418070 180

ATG ...

MIG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
BMDC
632675 33

TTG ...

LSP ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    sORF
E14
88844 57

CTG ...

LNF ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    sORF
Testis, v6-5
1280686 57

ATC ...

IVC ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    sORF
E14
282390 ENSMUST00000152757 Huwe1-221 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

443524 177

GTG ...

VLR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
443253 159

GTG ...

VAS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441843 162

TTG ...

LGF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
282389 30

ATG ...

MLA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
441628 162

GTG ...

VRH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441084 60

CTG ...

LVR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
442610 63

TTG ...

LAT ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver
443421 63

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
443035 111

GTG ...

VEV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441279 162

TTG ...

LVA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441590 135

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
442355 138

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
442569 132

GTG ...

VRA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
442796 99

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
418049 177

GTG ...

VAI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441458 216

ATG ...

MRE ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441311 153

TTG ...

LLF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
2987251 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1574057 111

ATG ...

MPC ...

Predicted
ATG

1 Samandi2017
    sORF
1594395 192

ATG ...

MRR ...

Predicted
ATG

1 Samandi2017
    sORF
442807 114

ATG ...

MLT ...

Predicted
ATG

1 Samandi2017
    sORF
1120008 117

ATG ...

MTT ...

Predicted
ATG

1 Samandi2017
    sORF
1526894 93

ATG ...

MFT ...

Predicted
ATG

1 Samandi2017
    sORF
1120777 168

ATG ...

MRE ...

Predicted
ATG

1 Samandi2017
    sORF
441458 216

ATG ...

MRE ...

Predicted
ATG

1 Samandi2017
    sORF
285142 180

ATG ...

MMS ...

Predicted
ATG

1 Samandi2017
    sORF
1336298 90

ATG ...

MAA ...

Predicted
ATG

1 Samandi2017
    sORF
1573929 93

ATG ...

MQK ...

Predicted
ATG

1 Samandi2017
    sORF
633968 144

ATG ...

MSS ...

Predicted
ATG

1 Samandi2017
    sORF
1076951 ENSMUST00000138566 Huwe1-212 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

631451 72

GTG ...

VTK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
    Upstream
E14
442905 33

TTG ...

LEQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    NMD
    sORF
    Upstream
Neutrophil
88284 57

ATG ...

MFI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    NMD
    sORF
    Upstream
E14, v6-5
88844 57

CTG ...

LNF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    NMD
    sORF
    Upstream
E14
441482 117

CTG ...

LSV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    NMD
    sORF
    Upstream
Neutrophil
277062 ENSMUST00000137816 Huwe1-210 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

7175 30

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1117608 69

GTG ...

VQP ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
281612 237

CTG ...

LAD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
278216 36

TTG ...

LQN ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, MEF,
NSC, v6-5
441311 153

TTG ...

LLF ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
283862 60

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
418049 177

GTG ...

VAI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, C2C12
281356 258

TTG ...

LDR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
277140 267

GTG ...

VDL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, v6-5
278269 84

ATG ...

MEF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
443035 111

GTG ...

VEV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
442796 99

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
443253 159

GTG ...

VAS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
442610 63

TTG ...

LAT ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
284412 87

TTG ...

LME ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil, v6-5
279697 42

TTG ...

LDL ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
766032 33

CTG ...

LEL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
441084 60

CTG ...

LVR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
441590 135

CTG ...

LGS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
443421 63

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
441843 162

TTG ...

LGF ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
764794 42

ATG ...

MQI ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
442569 132

GTG ...

VRA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
281893 261

CTG ...

LLD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
282761 33

TTG ...

LYV ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, v6-5
418070 180

ATG ...

MIG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
C2C12
282280 66

CTG ...

LDK ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil, v6-5
7094 66

ATG ...

MYL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, v6-5
88844 57

CTG ...

LNF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1119610 51

TTG ...

LNF ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
279352 69

ATG ...

MLD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
276256 123

GTG ...

VSY ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
441279 162

TTG ...

LVA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
275804 105

CTG ...

LIC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
442355 138

TTG ...

LGR ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
7237 48

ATG ...

MAL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC, v6-5
88284 57

ATG ...

MFI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1116607 ENSMUST00000150020 Huwe1-218 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

278618 228

ATG ...

MES ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1117993 81

TTG ...

LPQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1118958 75

CTG ...

LYW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
283600 126

CTG ...

LLF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
278098 123

TTG ...

LER ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
276675 111

TTG ...

LFI ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
276914 72

ATG ...

MPF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
283188 78

GTG ...

VIK ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
278153 36

CTG ...

LFR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
284652 102

TTG ...

LCR ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
283467 69

ATG ...

MAF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
277973 75

CTG ...

LDM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
278007 198

ATG ...

MEH ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
278674 96

GTG ...

VVD ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
278695 105

CTG ...

LAH ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
1335743 78

TTG ...

LYF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1118717 246

ATG ...

MFS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1117433 234

TTG ...

LTF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1118613 57

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
279264 186

CTG ...

LDV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
88276 102

TTG ...

LQE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1118419 63

CTG ...

LEL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
764731 ENSMUST00000130234 Huwe1-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

628942 102

CTG ...

LNY ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
764730 123

CTG ...

LEQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, v6-5
629968 ENSMUST00000150882 Huwe1-220 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

629967 48

CTG ...

LAY ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, v6-5
1119068 84

TTG ...

LNL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
277560 ENSMUST00000132453 Huwe1-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

765062 63

CTG ...

LDD ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, NSC
283689 138

CTG ...

LEF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1118409 93

CTG ...

LSS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
1526534 36

TTG ...

LVP ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
417883 81

AGG ...

RSD ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
277559 195

TTG ...

LLG ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, NSC
281425 111

GTG ...

VGN ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, NSC
88244 66

CTG ...

LLD ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, NSC
1118351 ENSMUST00000133051 Huwe1-209 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1590608 45

GTG ...

VGT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1590610 75

ATG ...

MRP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1118350 93

CTG ...

LKK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
1592513 66

ATG ...

MCY ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
629025 ENSMUST00000129714 Huwe1-204 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

629024 51

ATG ...

MRG ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
1281075 285

CTG ...

LLQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14

ORFs

366 ORFs
22 known transcripts
615 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1592850 57

ATG...

MIV...

ATG Intronic
sORF
InCDS
Overlapping
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
278007 198

ATG...

MEH...

ATG Intronic
sORF
Brain, R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
1277023 69

AAG...

KQA...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
281996 183

GTG...

VES...

GTG NMD
sORF
E14, Neutrophil, NSC,
v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
285142 180

ATG...

MMS...

ATG InCDS
Overlapping
sORF
B_cell, Brain, MEF,
3T3, Glioma, Liver,
MESC, Neutrophil, R1E,
v6-5,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
8 sORFs_org_Mouse
Johnstone2016
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
275854 42

ATG...

MVL...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
1573481 87

GTG...

VTG...

GTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
443421 63

CTG...

LSA...

CTG Intronic
sORF
ncRNA
Liver, MEF, NSC,
B_cell, 3T3, E14,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
3 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
283600 126

CTG...

LLF...

CTG Intronic
sORF
R1E, E14, v6-5,
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1590783 30

GTG...

VVK...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
278353 57

GTG...

VGM...

GTG ncRNA
sORF
Brain, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
strong 4 sORFs_org_Mouse
281425 111

GTG...

VGN...

GTG Intronic
sORF
Brain, v6-5, B_cell,
E14, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
2 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
278695 105

CTG...

LAH...

CTG Intronic
sORF
R1E, B_cell, Brain,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
2 sORFs_org_Mouse
1591633 63

ATG...

MRM...

ATG Intronic
sORF
InCDS
Overlapping
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
282280 66

CTG...

LDK...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Intronic
3T3, B_cell, MEF,
R1E, Brain, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
88276 102

TTG...

LQE...

TTG Intronic
sORF
Brain, Testis, B_cell,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
1278520 48

ATT...

ILP...

ATT NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1591205 39

CTG...

LDV...

CTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
1119916 87

TTG...

LTL...

TTG Alternative
InCDS
Overlapping
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1117259 114

ATG...

MLQ...

ATG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1280173 30

ATG...

MFK...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
E14, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
441311 153

TTG...

LLF...

TTG ncRNA
sORF
Intronic
Spleen_B_cell, v6-5, 3T3,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1116798 42

GTG...

VRL...

GTG ncRNA
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
282761 33

TTG...

LYV...

TTG ncRNA
sORF
Intronic
3T3, B_cell, MEF,
Neutrophil, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
442905 33

TTG...

LEQ...

TTG ncRNA
sORF
Alternative
NMD
Upstream
Intronic
3T3, B_cell, Liver,
MEF, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 5 sORFs_org_Mouse
1076951 ENSMUST00000138566 Huwe1-212 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1118409 93

CTG...

LSS...

CTG Intronic
sORF
v6-5, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1116815 36

TTG...

LCV...

TTG ncRNA
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1279432 72

AAG...

KIL...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
927756 279

GTG...

VLV...

GTG sORF
Intronic
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1076574 90

CTG...

LLN...

CTG NMD
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
284005 126

CTG...

LTF...

CTG NMD
sORF
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
441084 60

CTG...

LVR...

CTG ncRNA
sORF
Intronic
Alternative
Upstream
Spleen_B_cell, v6-5, E14,
B_cell, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
444376 72

GTG...

VQE...

GTG Alternative
sORF
Upstream
3T3, B_cell, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
443524 177

GTG...

VLR...

GTG ncRNA
sORF
B_cell, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
281984 33

ATG...

MTN...

ATG Intronic
sORF
ncRNA
Brain, v6-5, B_cell,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1592765 48

ATG...

MYV...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1754040 90

TTG...

LMT...

TTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1279376 60

AGG...

RKK...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1118402 72

ATG...

MEH...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
E14, NSC, v6-5,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
279352 69

ATG...

MLD...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
Brain, MEF, R1E,
v6-5, 3T3, B_cell,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 4 sORFs_org_Mouse
631106 48

TTG...

LKT...

TTG InCDS
Overlapping
sORF
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
631047 201

TTG...

LEE...

TTG NMD
sORF
Alternative
InCDS
Overlapping
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
89590 66

TTG...

LIE...

TTG Intronic
sORF
Testis, Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
443010 111

CTG...

LTP...

CTG Alternative
InCDS
Overlapping
sORF
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1753640 57

CTG...

LCL...

CTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
1574057 111

ATG...

MPC...

ATG sORF
Alternative
InCDS
Overlapping
Glioma, Liver,
MEF, MESC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1280445 45

AGG...

RQW...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
631451 72

GTG...

VTK...

GTG NMD
sORF
Upstream
ncRNA
E14, v6-5, 3T3,
MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1076951 ENSMUST00000138566 Huwe1-212 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 4 sORFs_org_Mouse
88284 57

ATG...

MFI...

ATG Intronic
sORF
Alternative
NMD
Upstream
ncRNA
R1E, BMDC, MEF,
Testis, E14, v6-5,
B_cell, Liver, NSC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
3 sORFs_org_Mouse
1076951 ENSMUST00000138566 Huwe1-212 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
5 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
1118058 48

ATG...

MSC...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
v6-5, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
629690 54

ATG...

MYL...

ATG InCDS
Overlapping
sORF
3T3, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1118825 144

CTG...

LFK...

CTG InCDS
Overlapping
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1118096 159

CTG...

LTL...

CTG Intronic
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
89423 30

GTG...

VAV...

GTG sORF
ncRNA
Testis, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
7175 30

TTG...

LDL...

TTG Intronic
sORF
ncRNA
Alternative
InCDS
Overlapping
v6-5, 3T3, B_cell,
MEF, NSC, Brain,
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
strong 4 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
276248 69

GTG...

VDQ...

GTG Intronic
sORF
Brain, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
3 sORFs_org_Mouse
88385 159

CTG...

LSS...

CTG Intronic
sORF
Brain, E14, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
4 sORFs_org_Mouse
1116572 33

CTG...

LSC...

CTG ncRNA
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
278618 228

ATG...

MES...

ATG Intronic
sORF
E14, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1117608 69

GTG...

VQP...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
E14, v6-5, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
442796 99

CTG...

LGS...

CTG Intronic
sORF
ncRNA
E14, Liver, 3T3,
MEF, Spleen_B_cell, NSC,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
3 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1594229 81

CTG...

LLA...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1594332 72

ATG...

MQI...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
441279 162

TTG...

LVA...

TTG ncRNA
sORF
Intronic
Spleen_B_cell, MEF, Neutrophil,
B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
2 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
282389 30

ATG...

MLA...

ATG ncRNA
sORF
Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1118312 111

CTG...

LQK...

CTG NMD
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1116689 75

TTG...

LFS...

TTG Intronic
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
1 sORFs_org_Mouse
765062 63

CTG...

LDD...

CTG Intronic
sORF
B_cell, E14, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
1 sORFs_org_Mouse
927020 234

AGG...

RKF...

AGG sORF
Intronic
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1593855 126

ATG...

MKR...

ATG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
441843 162

TTG...

LGF...

TTG ncRNA
sORF
Intronic
MEF, Spleen_B_cell, B_cell,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
628942 102

CTG...

LNY...

CTG Intronic
sORF
InCDS
Overlapping
B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

764731 ENSMUST00000130234 Huwe1-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
281612 237

CTG...

LAD...

CTG Intronic
sORF
ncRNA
Brain, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
276256 123

GTG...

VSY...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
MEF, R1E, Brain,
v6-5, 3T3, B_cell,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 5 sORFs_org_Mouse
278098 123

TTG...

LER...

TTG Intronic
sORF
Brain, R1E, E14,
v6-5, MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
4 sORFs_org_Mouse
1117993 81

TTG...

LPQ...

TTG Intronic
sORF
v6-5, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1754056 87

ATG...

MTA...

ATG Alternative
InCDS
Overlapping
sORF
NMD
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
629967 48

CTG...

LAY...

CTG ncRNA
sORF
3T3, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

629968 ENSMUST00000150882 Huwe1-220 processed_transcript Ribo-seq
2 sORFs_org_Mouse
283188 78

GTG...

VIK...

GTG Intronic
sORF
B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell, E14,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
6 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
2 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275479 102

TTG...

LYH...

TTG Intronic
sORF
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1594395 192

ATG...

MRR...

ATG InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1391912 42

GTG...

VVF...

GTG Alternative
InCDS
Overlapping
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1591480 30

CTG...

LIQ...

CTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
1118958 75

CTG...

LYW...

CTG Intronic
sORF
v6-5, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1120148 195

TTG...

LDS...

TTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
633968 144

ATG...

MSS...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, B_cell,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
275804 105

CTG...

LIC...

CTG Intronic
sORF
ncRNA
B_cell, Brain, v6-5,
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
280957 156

GTG...

VIR...

GTG NMD
sORF
B_cell, Brain, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
6 sORFs_org_Mouse
281759 87

CTG...

LED...

CTG Intronic
sORF
B_cell, Brain, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
4 sORFs_org_Mouse
1574499 30

CTG...

LLW...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1526721 33

TTG...

LQN...

TTG Alternative
InCDS
Overlapping
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
631202 60

GTG...

VTM...

GTG InCDS
Overlapping
sORF
B_cell, MEF, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1590529 39

CTG...

LGL...

CTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
441458 216

ATG...

MRE...

ATG ncRNA
sORF
Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
635727 159

GTG...

VSS...

GTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1276857 273

GTG...

VLQ...

GTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
444297 120

GTG...

VLQ...

GTG sORF
Upstream
3T3, B_cell, Liver,
MEF, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
278216 36

TTG...

LQN...

TTG Intronic
sORF
Brain, E14, MEF,
NSC, v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
5 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
283862 60

GTG...

VER...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
B_cell, Brain, MEF,
v6-5, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
2 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1277785 30

CTG...

LSY...

CTG Intronic
sORF
E14, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
765131 33

CTG...

LRC...

CTG Alternative
InCDS
Overlapping
sORF
B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
275456 183

TTG...

LCH...

TTG NMD
sORF
B_cell, Brain, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
1279756 240

TTG...

LVR...

TTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
287316 204

TTG...

LLI...

TTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
12 sORFs_org_Mouse
1594156 159

GTG...

VAV...

GTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1278195 33

AGG...

RYD...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1278433 66

AGG...

RPC...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1118310 144

CTG...

LLL...

CTG NMD
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1119804 72

CTG...

LYW...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
284412 87

TTG...

LME...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
MEF, R1E, Brain,
Neutrophil, v6-5, 3T3,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 4 sORFs_org_Mouse
1120468 54

CTG...

LSG...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
281814 108

TTG...

LVT...

TTG NMD
sORF
E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
278269 84

ATG...

MEF...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
MEF, Brain, 3T3,
B_cell, Neutrophil, v6-5,
E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 5 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1076578 96

CTG...

LGS...

CTG Intronic
sORF
NMD
E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
279133 78

TTG...

LYN...

TTG Intronic
sORF
Brain, MEF, Neutrophil,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
4 sORFs_org_Mouse
443253 159

GTG...

VAS...

GTG ncRNA
sORF
Intronic
B_cell, MEF, Neutrophil,
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7307 81

ATG...

MMK...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Skin_tumor, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
444408 126

GTG...

VLV...

GTG sORF
Upstream
3T3, B_cell, Liver,
MEF, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
286630 243

CTG...

LKM...

CTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
11 sORFs_org_Mouse
1574077 30

TTG...

LLM...

TTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1277339 78

GTG...

VLK...

GTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1526894 93

ATG...

MFT...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, NSC,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1591795 117

CTG...

LRM...

CTG InCDS
Overlapping
sORF
Intronic
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
632675 33

TTG...

LSP...

TTG ncRNA
sORF
3T3, B_cell, MEF,
NSC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 5 sORFs_org_Mouse
88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1120008 117

ATG...

MTT...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, v6-5,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
418049 177

GTG...

VAI...

GTG Intronic
sORF
ncRNA
3T3, C2C12, E14,
MEF, Neutrophil, BMDC,
B_cell, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
2 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
276342 141

CTG...

LSK...

CTG NMD
sORF
B_cell, Brain, E14,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
444328 51

GTG...

VRF...

GTG ncRNA
sORF
B_cell, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1120777 168

ATG...

MRE...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, v6-5,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1754484 51

TTG...

LYF...

TTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
765527 48

CTG...

LRR...

CTG Intronic
sORF
ncRNA
MEF, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
443035 111

GTG...

VEV...

GTG ncRNA
sORF
Intronic
MEF, Spleen_B_cell, v6-5,
3T3, E14, B_cell,
Liver, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
3 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1594092 138

ATG...

MIV...

ATG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
285391 177

ATG...

MSN...

ATG InCDS
Overlapping
sORF
B_cell, Brain, MEF,
3T3, E14, Neutrophil,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
8 sORFs_org_Mouse
1592942 78

GTG...

VAV...

GTG Intronic
sORF
InCDS
Overlapping
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1120495 57

GTG...

VER...

GTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1591476 51

ATG...

MNL...

ATG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1279308 150

AAG...

KFL...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
7353 78

ATG...

MKV...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
MEF, Skin_tumor, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1277075 54

ATC...

IWC...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
444220 153

CTG...

LGS...

CTG sORF
Upstream
3T3, B_cell, MEF,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
1590608 45

GTG...

VGT...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1118351 ENSMUST00000133051 Huwe1-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
629225 51

GTG...

VAH...

GTG InCDS
Overlapping
sORF
NMD
3T3, B_cell, E14,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
283404 54

ATG...

MMT...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
283689 138

CTG...

LEF...

CTG Intronic
sORF
BMDC, Brain, MEF,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
283467 69

ATG...

MAF...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, B_cell, Brain,
NSC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
441628 162

GTG...

VRH...

GTG ncRNA
sORF
B_cell, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
442807 114

ATG...

MLT...

ATG sORF
Alternative
InCDS
Overlapping
Spleen_B_cell, 3T3,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
276914 72

ATG...

MPF...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, v6-5, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1119610 51

TTG...

LNF...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
276675 111

TTG...

LFI...

TTG Intronic
sORF
v6-5, MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
1077394 78

CTG...

LID...

CTG Intronic
sORF
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
926795 69

ATA...

IHL...

ATA InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
281356 258

TTG...

LDR...

TTG Intronic
sORF
ncRNA
Neutrophil, R1E, Brain,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
281668 33

CTG...

LYL...

CTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
89957 63

ATG...

MFI...

ATG sORF
ncRNA
BMDC, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell, Testis,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
13 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
441482 117

CTG...

LSV...

CTG sORF
ncRNA
Alternative
NMD
Upstream
Intronic
MEF, 3T3, B_cell,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 4 sORFs_org_Mouse
1076951 ENSMUST00000138566 Huwe1-212 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1526534 36

TTG...

LVP...

TTG Intronic
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
442355 138

TTG...

LGR...

TTG ncRNA
sORF
Intronic
Alternative
Upstream
Spleen_B_cell, MEF, B_cell,
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1278149 42

AGG...

RRN...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
278153 36

CTG...

LFR...

CTG Intronic
sORF
E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1575220 93

CTG...

LPQ...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1574731 87

TTG...

LNF...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
277140 267

GTG...

VDL...

GTG Intronic
sORF
ncRNA
R1E, Neutrophil, v6-5,
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
285746 228

TTG...

LAV...

TTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
13 sORFs_org_Mouse
443912 33

CTG...

LPF...

CTG Alternative
sORF
Upstream
B_cell, Liver, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
1280014 36

CTG...

LAS...

CTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
443829 180

TTG...

LVA...

TTG sORF
Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
764794 42

ATG...

MQI...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
B_cell, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1279565 147

AGG...

RYR...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1277735 93

AGG...

RKD...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1594370 81

TTG...

LNF...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1573929 93

ATG...

MQK...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, Brain,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1279363 39

AAG...

KNW...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1526445 39

CTG...

LAL...

CTG InCDS
Overlapping
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1077687 90

TTG...

LSV...

TTG NMD
sORF
E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1280189 156

ATT...

IQK...

ATT NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
284652 102

TTG...

LCR...

TTG Intronic
sORF
E14, v6-5, B_cell,
Brain, MEF, Neutrophil,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
4 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
281893 261

CTG...

LLD...

CTG ncRNA
sORF
Intronic
MEF, R1E, Neutrophil,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
286179 174

CTG...

LYS...

CTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
13 sORFs_org_Mouse
629343 69

ATG...

MSA...

ATG InCDS
Overlapping
sORF
MEF, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1278809 60

AGG...

RER...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1118590 189

TTG...

LMV...

TTG Intronic
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
442610 63

TTG...

LAT...

TTG ncRNA
sORF
Intronic
B_cell, Liver, 3T3,
Spleen_B_cell, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
277973 75

CTG...

LDM...

CTG Intronic
sORF
E14, Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1525257 36

CTG...

LQS...

CTG ncRNA
sORF
MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
1526157 33

CTG...

LLQ...

CTG NMD
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
276130 96

TTG...

LGL...

TTG NMD
sORF
Brain, E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
444535 39

CTG...

LVL...

CTG Alternative
sORF
Upstream
3T3, B_cell, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
88844 57

CTG...

LNF...

CTG NMD
sORF
Upstream
ncRNA
Intronic
E14, 3T3, MEF,
NSC, Brain, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1076951 ENSMUST00000138566 Huwe1-212 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
moderate 4 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
631427 219

TTG...

LKK...

TTG NMD
sORF
Alternative
InCDS
Overlapping
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
7202 51

CTG...

LYR...

CTG InCDS
Overlapping
sORF
Spleen_B_cell, MEF, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
634121 96

GTG...

VAH...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1335610 63

TTG...

LTF...

TTG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
277660 69

ATG...

MAA...

ATG ncRNA
sORF
Intronic
v6-5, R1E, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1118613 57

CTG...

LPP...

CTG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1117671 33

GTG...

VER...

GTG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
281928 54

TTG...

LVD...

TTG Intronic
sORF
Brain, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
3 sORFs_org_Mouse
279536 147

TTG...

LDE...

TTG Intronic
sORF
Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
2 sORFs_org_Mouse
444007 177

GTG...

VAS...

GTG sORF
Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1593452 54

ATG...

MMN...

ATG InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
282498 60

CTG...

LGQ...

CTG NMD
sORF
B_cell, Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
629024 51

ATG...

MRG...

ATG ncRNA
sORF
3T3, Brain, E14,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

629025 ENSMUST00000129714 Huwe1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
moderate 5 sORFs_org_Mouse
1120272 123

GTG...

VGF...

GTG InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1279787 192

AGG...

REV...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
281271 36

GTG...

VAS...

GTG Alternative
InCDS
Overlapping
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
7237 48

ATG...

MAL...

ATG Intronic
sORF
Skin_tumor, B_cell, Brain,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
3 sORFs_org_Mouse
766148 33

TTG...

LFI...

TTG ncRNA
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1077503 129

TTG...

LRD...

TTG Intronic
sORF
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
1279645 204

TTG...

LGF...

TTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
443621 36

GTG...

VLP...

GTG Alternative
sORF
Upstream
B_cell, Liver, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
635551 99

CTG...

LSE...

CTG Alternative
InCDS
Overlapping
sORF
3T3, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1280021 30

ATT...

ICV...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1594089 63

CTG...

LEL...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
278674 96

GTG...

VVD...

GTG Intronic
sORF
E14, v6-5, Brain,
MEF, Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
4 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1279382 36

AGG...

RGM...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
279697 42

TTG...

LDL...

TTG Intronic
sORF
E14, MEF, NSC,
v6-5, B_cell, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
4 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
3 sORFs_org_Mouse
1117508 162

GTG...

VGS...

GTG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1277397 126

AAG...

KQG...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7359 72

GTG...

VKK...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Brain, Skin_tumor,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
4 sORFs_org_Mouse
766032 33

CTG...

LEL...

CTG Intronic
sORF
v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1573141 51

TTG...

LLE...

TTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1278456 216

AAG...

KKS...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
764781 33

GTG...

VLQ...

GTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1281382 81

AGG...

RKF...

AGG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1833767 42

ATG...

MWT...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
417883 81

AGG...

RSD...

AGG Intronic
sORF
BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
766245 177

GTG...

VSY...

GTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
441590 135

CTG...

LGS...

CTG Intronic
sORF
ncRNA
3T3, B_cell, Spleen_B_cell,
MEF, NSC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
1 sORFs_org_Mouse
634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
3 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1593305 111

ATG...

MRR...

ATG InCDS
Overlapping
sORF
Intronic
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
443708 54

GTG...

VLG...

GTG sORF
Upstream
B_cell, Brain, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
13 sORFs_org_Mouse
280387 129

TTG...

LKL...

TTG NMD
sORF
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
287320 219

TTG...

LNF...

TTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
12 sORFs_org_Mouse
926747 186

ATG...

MTM...

ATG sORF
Intronic
ncRNA
BMDC, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
286181 30

CTG...

LTR...

CTG ncRNA
sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
10 sORFs_org_Mouse
1573781 126

TTG...

LSW...

TTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1118098 87

ATG...

MRR...

ATG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1573958 81

ATG...

MKP...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1116846 48

GTG...

VGH...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, v6-5, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1753476 33

GTG...

VNL...

GTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1574046 90

CTG...

LVT...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1277280 99

AAG...

KRR...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1279715 51

ATC...

ICP...

ATC Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
7355 60

ATG...

MKM...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Brain, Skin_tumor,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
4 sORFs_org_Mouse
1077276 81

TTG...

LAE...

TTG Intronic
sORF
MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
7503 45

ATG...

MAL...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, Skin_tumor, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1076674 87

TTG...

LNT...

TTG NMD
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
7094 66

ATG...

MYL...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
Glioma, Liver, MEF,
MESC, B_cell, 3T3,
NSC, Skin_tumor, Brain,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
1276862 51

CTG...

LRD...

CTG NMD
sORF
E14, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
632648 183

GTG...

VKV...

GTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1280328 36

AGG...

RLL...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
280346 78

GTG...

VGI...

GTG ncRNA
sORF
Intronic
Liver, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
277559 195

TTG...

LLG...

TTG Intronic
sORF
Brain, NSC, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
2 sORFs_org_Mouse
1592170 30

ATG...

MLA...

ATG Alternative
InCDS
Overlapping
sORF
MEF, Glioma, Liver,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
1276760 99

ATG...

MWT...

ATG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1590582 63

CTG...

LNS...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
277917 171

TTG...

LSN...

TTG NMD
sORF
E14, NSC, v6-5,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
284915 114

CTG...

LAV...

CTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
10 sORFs_org_Mouse
766735 30

TTG...

LFT...

TTG NMD
sORF
B_cell, Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
1280086 123

ATC...

ISV...

ATC NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1590610 75

ATG...

MRP...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
MEF, Glioma, Liver,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1118351 ENSMUST00000133051 Huwe1-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
1119068 84

TTG...

LNL...

TTG ncRNA
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

629968 ENSMUST00000150882 Huwe1-220 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1279789 51

AGG...

RRK...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1277494 165

AAG...

KPS...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
282151 192

CTG...

LAI...

CTG NMD
sORF
B_cell, Brain, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
764813 33

GTG...

VSC...

GTG InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
444195 33

GTG...

VLP...

GTG ncRNA
sORF
MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1279857 48

AGG...

RNV...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
443738 63

CTG...

LRR...

CTG Alternative
sORF
Upstream
3T3, B_cell, Liver,
MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
442569 132

GTG...

VRA...

GTG Intronic
sORF
ncRNA
3T3, B_cell, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
282390 ENSMUST00000152757 Huwe1-221 processed_transcript Ribo-seq
1 sORFs_org_Mouse
278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
2 sORFs_org_Mouse
279264 186

CTG...

LDV...

CTG Intronic
sORF
Brain, R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
281209 156

GTG...

VPI...

GTG Intronic
sORF
Brain, MEF, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
1594318 144

ATG...

MRM...

ATG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
280180 81

CTG...

LSK...

CTG NMD
sORF
Brain, E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
1280040 78

AAG...

KRK...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
444518 60

CTG...

LRR...

CTG ncRNA
sORF
3T3, B_cell, Brain,
MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
5 sORFs_org_Mouse
444045 81

CTG...

LSA...

CTG sORF
Upstream
B_cell, Liver, MEF,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
285155 153

TTG...

LTT...

TTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
14 sORFs_org_Mouse
89297 147

TTG...

LNA...

TTG NMD
sORF
Brain, E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
1335743 78

TTG...

LYF...

TTG Intronic
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
766434 30

CTG...

LTL...

CTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
88244 66

CTG...

LLD...

CTG Intronic
sORF
Testis, v6-5, Neutrophil,
NSC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88245 ENSMUST00000139909 Huwe1-215 retained_intron Ribo-seq
2 sORFs_org_Mouse
277560 ENSMUST00000132453 Huwe1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
1525222 105

TTG...

LNL...

TTG NMD
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
631236 39

TTG...

LST...

TTG ncRNA
sORF
3T3, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
1118846 75

CTG...

LSR...

CTG NMD
sORF
E14, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
weak 4 sORFs_org_Mouse
1118965 57

TTG...

LVP...

TTG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1525572 57

TTG...

LFF...

TTG ncRNA
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
285000 294

GTG...

VEN...

GTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
12 sORFs_org_Mouse
1118717 246

ATG...

MFS...

ATG Intronic
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
418070 180

ATG...

MIG...

ATG sORF
Intronic
BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
277062 ENSMUST00000137816 Huwe1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
1526850 117

CTG...

LPI...

CTG Alternative
InCDS
Overlapping
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1593950 99

GTG...

VQP...

GTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
631231 42

CTG...

LMA...

CTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1594251 66

TTG...

LPG...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1117433 234

TTG...

LTF...

TTG Intronic
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
1 sORFs_org_Mouse
1118419 63

CTG...

LEL...

CTG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1116607 ENSMUST00000150020 Huwe1-218 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1754535 30

CTG...

LPG...

CTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1336298 90

ATG...

MAA...

ATG sORF
Alternative
InCDS
Overlapping
E14, Glioma,
Liver, MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2987251 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
277724 72

TTG...

LTV...

TTG Intronic
sORF
MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
1592464 45

ATG...

MKR...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
764730 123

CTG...

LEQ...

CTG Intronic
sORF
B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

764731 ENSMUST00000130234 Huwe1-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
287104 132

TTG...

LAS...

TTG InCDS
Overlapping
sORF
3T3, Brain, MEF,
Neutrophil, R1E, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
7 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
444623 129

GTG...

VEV...

GTG sORF
Upstream
3T3, B_cell, Liver,
MEF, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
1117475 33

ATG...

MKL...

ATG NMD
sORF
E14, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
278632 69

TTG...

LEL...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1279873 252

AAG...

KNL...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
284565 246

CTG...

LWN...

CTG NMD
sORF
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
764776 165

TTG...

LRH...

TTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
767429 33

ATG...

MTN...

ATG ncRNA
sORF
B_cell, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
3 sORFs_org_Mouse
443838 117

CTG...

LGS...

CTG sORF
Upstream
3T3, B_cell, Liver,
MEF, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
1526490 57

CTG...

LFL...

CTG NMD
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
443875 33

ATG...

MTM...

ATG sORF
Upstream
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
17 sORFs_org_Mouse
444278 69

GTG...

VQE...

GTG ncRNA
sORF
3T3, B_cell, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1277056 75

AAG...

KKK...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
278092 51

ATG...

MTT...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
Brain, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1527142 39

TTG...

LDL...

TTG Alternative
InCDS
Overlapping
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
927998 93

AGG...

RFS...

AGG ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1117478 93

GTG...

VKM...

GTG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1277154 117

AGG...

RSN...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
281358 117

CTG...

LAP...

CTG NMD
sORF
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
5 sORFs_org_Mouse
278798 45

ATG...

MDF...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
strong 1 Johnstone2016
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1277002 108

GTG...

VVE...

GTG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
285216 117

GTG...

VLA...

GTG ncRNA
sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
12 sORFs_org_Mouse
280701 36

CTG...

LRW...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
1754886 42

CTG...

LPW...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
634521 198

GTG...

VAS...

GTG ncRNA
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1594436 198

CTG...

LRM...

CTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1117887 66

TTG...

LLE...

TTG Intronic
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
1 sORFs_org_Mouse
444181 51

TTG...

LGF...

TTG sORF
Upstream
B_cell, Brain, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
12 sORFs_org_Mouse
634789 201

TTG...

LVA...

TTG ncRNA
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

634522 ENSMUST00000149344 Huwe1-217 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1279106 114

AGG...

RNR...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

276249 ENSMUST00000139245 Huwe1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1593615 78

CTG...

LAD...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1754220 36

TTG...

LIL...

TTG NMD
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
285492 141

TTG...

LAS...

TTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
12 sORFs_org_Mouse
1281075 285

CTG...

LLQ...

CTG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

629025 ENSMUST00000129714 Huwe1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
89483 57

TTG...

LPV...

TTG Intronic
sORF
Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
275480 ENSMUST00000130243 Huwe1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1279023 33

ATA...

IQQ...

ATA NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1594109 144

GTG...

VRV...

GTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1279965 102

AGG...

RLP...

AGG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1280686 57

ATC...

IVC...

ATC sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88285 ENSMUST00000156616 Huwe1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
1525591 45

CTG...

LPS...

CTG NMD
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
634049 147

TTG...

LMS...

TTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1278332 51

ATC...

IYS...

ATC NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1277884 102

CTG...

LHL...

CTG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278354 ENSMUST00000139386 Huwe1-214 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1592524 60

GTG...

VCI...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1118350 93

CTG...

LKK...

CTG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1118351 ENSMUST00000133051 Huwe1-209 retained_intron Ribo-seq
2 sORFs_org_Mouse
88267 63

CTG...

LKH...

CTG NMD
sORF
Brain, E14, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
1118775 150

ATG...

MVL...

ATG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1120450 183

GTG...

VYS...

GTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1120714 123

CTG...

LYM...

CTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1277109 69

AAG...

KYP...

AAG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1594429 75

CTG...

LSG...

CTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
767804 54

CTG...

LRC...

CTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1279582 48

ATC...

IFL...

ATC NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
286977 120

GTG...

VVL...

GTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

284916 ENSMUST00000147666 Huwe1-216 processed_transcript Ribo-seq
10 sORFs_org_Mouse
1592513 66

ATG...

MCY...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1118351 ENSMUST00000133051 Huwe1-209 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
88714 48

CTG...

LQK...

CTG NMD
sORF
Brain, MEF, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
1120553 171

TTG...

LMR...

TTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
443924 195

GTG...

VAI...

GTG sORF
Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1277468 81

ACG...

TGW...

ACG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7095 ENSMUST00000131786 Huwe1-207 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
443632 87

TTG...

LVR...

TTG sORF
Upstream
3T3, B_cell, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

278799 ENSMUST00000026292 Huwe1-201 protein_coding Ribo-seq
13 sORFs_org_Mouse
1118051 138

CTG...

LLL...

CTG NMD
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1077681 ENSMUST00000123306 Huwe1-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1278004 123

ACG...

TFF...

ACG NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88268 ENSMUST00000138023 Huwe1-211 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
282496 153

CTG...

LGS...

CTG Intronic
sORF
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7308 ENSMUST00000150426 Huwe1-219 retained_intron Ribo-seq
3 sORFs_org_Mouse
1590931 42

TTG...

LYS...

TTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1281298 96

AGG...

RYD...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7203 ENSMUST00000112622 Huwe1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5