Transcript 278354

Transcript

ID CARD

MetamORF ID

278354

ENSMUST00000139386

Name

Huwe1-214

Strand

Biotype

processed_transcript

Start-end positions

151800883-151804511

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:59026

Aliases

5430439H10Rik,
Arf-bp1, AU041296, C430014N20Rik,
C80292, ENSMUSG00000025261, Gm1718,
Huwe1, Ib772, LASU1,
MGI:1926884, Mule, NCBI:59026,
OFF:Huwe1, Ureb1

Chr X

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278353	57	GTG ...	VGM ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
441311	153	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
1116798	42	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1116815	36	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
441084	60	CTG ...	LVR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
1116572	33	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
441279	162	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
282389	30	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
441458	216	ATG ...	MRE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
281984	33	ATG ...	MTN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
441843	162	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
444328	51	GTG ...	VRF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell, v6-5
443035	111	GTG ...	VEV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell, v6-5
442355	138	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1279565	147	AGG ...	RYR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
277660	69	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
443524	177	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
442796	99	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
441628	162	GTG ...	VRH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
442610	63	TTG ...	LAT ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
444195	33	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
444518	60	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell
441590	135	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
629024	51	ATG ...	MRG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, v6-5
444278	69	GTG ...	VQE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Spleen_B_cell
443421	63	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
443253	159	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
442569	132	GTG ...	VRA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
1277884	102	CTG ...	LHL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
418049	177	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5

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