Transcript 278799

Transcript

ID CARD

MetamORF ID

278799

ENSMUST00000026292

Name

Huwe1-201

Strand

Biotype

protein_coding

Start-end positions

151803327-151935417

CDS Start-stop positions

151835248-151934383

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:59026

Aliases

5430439H10Rik,
Arf-bp1, AU041296, C430014N20Rik,
C80292, ENSMUSG00000025261, Gm1718,
Huwe1, Ib772, LASU1,
MGI:1926884, Mule, NCBI:59026,
OFF:Huwe1, Ureb1

Chr X

ORFs

91 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
285142	180	ATG ...	MMS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF
275854	42	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1573481	87	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
444376	72	GTG ...	VQE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
443010	111	CTG ...	LTP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1593855	126	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1574499	30	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
631202	60	GTG ...	VTM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
444297	120	GTG ...	VLQ ...	Ribo-seq	GTG		9	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
765131	33	CTG ...	LRC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
282280	66	CTG ...	LDK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
278269	84	ATG ...	MEF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
7307	81	ATG ...	MMK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
444408	126	GTG ...	VLV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
1574077	30	TTG ...	LLM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1591795	117	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1594092	138	ATG ...	MIV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
285391	177	ATG ...	MSN ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF
444220	153	CTG ...	LGS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, NSC, Spleen_B_cell
283404	54	ATG ...	MMT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
7353	78	ATG ...	MKV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1119610	51	TTG ...	LNF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1591633	63	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1575220	93	CTG ...	LPQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
283862	60	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
443912	33	CTG ...	LPF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver, MEF, Spleen_B_cell
443829	180	TTG ...	LVA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
442807	114	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1594370	81	TTG ...	LNF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
629343	69	ATG ...	MSA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
764794	42	ATG ...	MQI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1592942	78	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
444535	39	CTG ...	LVL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
7202	51	CTG ...	LYR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
279352	69	ATG ...	MLD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1574057	111	ATG ...	MPC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
444007	177	GTG ...	VAS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
7175	30	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
281271	36	GTG ...	VAS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
443621	36	GTG ...	VLP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver, MEF, Spleen_B_cell
7359	72	GTG ...	VKK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1573141	51	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
764781	33	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1281382	81	AGG ...	RKF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
766245	177	GTG ...	VSY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1593305	111	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
443708	54	GTG ...	VLG ...	Ribo-seq	GTG		13	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
1573929	93	ATG ...	MQK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
276256	123	GTG ...	VSY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1573781	126	TTG ...	LSW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
635727	159	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1574046	90	CTG ...	LVT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
7355	60	ATG ...	MKM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1592850	57	ATG ...	MIV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1592170	30	ATG ...	MLA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
632648	183	GTG ...	VKV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
629690	54	ATG ...	MYL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
764813	33	GTG ...	VSC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
443738	63	CTG ...	LRR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF, Spleen_B_cell
1120495	57	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1594318	144	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
633968	144	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
444045	81	CTG ...	LSA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF Upstream	B_cell, Liver, MEF, NSC, Spleen_B_cell
766434	30	CTG ...	LTL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
284412	87	TTG ...	LME ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1593950	99	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
441084	60	CTG ...	LVR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
631106	48	TTG ...	LKT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
444623	129	GTG ...	VEV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Liver, MEF, NSC, Spleen_B_cell
764776	165	TTG ...	LRH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
443838	117	CTG ...	LGS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Liver, MEF, NSC, Spleen_B_cell
1594395	192	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
443875	33	ATG ...	MTM ...	Ribo-seq	ATG		17	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
1573958	81	ATG ...	MKP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
280701	36	CTG ...	LRW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
287104	132	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF
1754886	42	CTG ...	LPW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
7503	45	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
444181	51	TTG ...	LGF ...	Ribo-seq	TTG		12	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
1117608	69	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1594251	66	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1594156	159	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1594332	72	ATG ...	MQI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
442355	138	TTG ...	LGR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
767804	54	CTG ...	LRC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
278092	51	ATG ...	MTT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
443924	195	GTG ...	VAI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
443632	87	TTG ...	LVR ...	Ribo-seq	TTG		13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
278798	45	ATG ...	MDF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
634049	147	TTG ...	LMS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1594436	198	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF

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