Gene NCBI:52898 | MetamORF

Gene

ID CARD

NCBI:52898

Aliases

2310033H11Rik
AA571397, D11Bwg0434e, ENSMUSG00000093989
MGI:106369, NCBI:52898, OFF:Rnasek
Rnasek

Chromosome

Transcripts

11 ORFs
2 known transcripts
14 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

450862

ENSMUST00000040428

Rnasek-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
90796	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell
91829	51	GTG ...	VGL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell
17430	117	CTG ...	LCS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Overlapping sORF Upstream	Liver, MEF, Spleen_B_cell

17431

ENSMUST00000125752

Rnasek-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
299151	231	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
91829	51	GTG ...	VGL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Testis
21450	78	CTG ...	LAA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	CDS NMD sORF	Brain, Testis
304685	96	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
19981	117	CTG ...	LYE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
91617	96	CTG ...	LCC ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	CDS NMD sORF	B_cell, Brain, MEF, Testis
90796	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Testis
299843	279	CTG ...	LFH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
17430	117	CTG ...	LCS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Brain, Testis
307767	105	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
17986	45	GTG ...	VLI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, Testis

ORFs

11 ORFs
2 known transcripts
14 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

90796

GTG...

VAS...

GTG

InCDS
Overlapping
sORF
NMD
Upstream
Alternative

Liver, Spleen_B_cell, BMDC,
R1E, B_cell, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
450862	ENSMUST00000040428	Rnasek-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

17986

GTG...

VLI...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

Liver, MEF, Neutrophil,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

299151

231

CTG...

LPS...

CTG

Downstream
NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

91829

GTG...

VGL...

GTG

NMD
sORF
Upstream
Alternative
InCDS
Overlapping

Neutrophil, R1E, B_cell,
Brain, Testis, Liver,
Spleen_B_cell, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	strong	5	sORFs_org_Mouse
450862	ENSMUST00000040428	Rnasek-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

21450

CTG...

LAA...

CTG

CDS
NMD
sORF
Alternative
Upstream
InCDS
Overlapping

Brain, Testis, R1E,
3T3, BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

17430

117

CTG...

LCS...

CTG

NMD
Overlapping
sORF
Upstream
Alternative

3T3, BMDC, E14,
Liver, Neutrophil, R1E,
B_cell, Brain, Testis,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	weak	5	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
450862	ENSMUST00000040428	Rnasek-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

304685

GTG...

VTL...

GTG

Downstream
NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

19981

117

CTG...

LYE...

CTG

Alternative
Downstream
NMD
sORF
CDS

Brain, Testis, Liver,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

91617

CTG...

LCC...

CTG

CDS
NMD
sORF
Alternative
Upstream
InCDS
Overlapping

B_cell, Brain, MEF,
Testis, Neutrophil, R1E,
3T3, BMDC, E14,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse
1036754	ENSMUST00000176116	Gm21988-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

299843

279

CTG...

LFH...

CTG

Downstream
NMD
sORF
Alternative
Overlapping

Brain, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
20806	ENSMUST00000176268	Gm21988-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

307767

105

TTG...

LGL...

TTG

Downstream
NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17431	ENSMUST00000125752	Rnasek-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

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