Gene NCBI:230935 | MetamORF

Gene

ID CARD

NCBI:230935

Aliases

Dnajc11
E030019A03Rik, ENSMUSG00000039768, MGI:2443386
NCBI:230935, OFF:Dnajc11

Chromosome

Transcripts

103 ORFs
11 known transcripts
238 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

510156

ENSMUST00000139555

Dnajc11-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1081895	54	TTG ...	LHS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
158703	42	GTG ...	VLC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
159177	147	CTG ...	LCS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
554544	48	CTG ...	LGY ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
159629	72	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
545211	75	ATG ...	MKM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
151901	93	TTG ...	LSE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
509740	87	ATG ...	MMR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, NSC
158677	108	GTG ...	VGY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
147340	144	GTG ...	VVE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
55916	198	GTG ...	VTT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
550277	51	ATG ...	MEL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
149142	174	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1377713	180	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
154381	123	CTG ...	LDK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
547064	45	CTG ...	LRG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC
554661	45	CTG ...	LWA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, NSC
1655572	198	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
56040	78	TTG ...	LEF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil
57628	45	GTG ...	VSI ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil
151193	63	TTG ...	LRD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
512434	84	ATG ...	MRN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1509797	33	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	NSC
160015	99	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
152150	90	CTG ...	LGI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
548486	69	ATG ...	MCP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
152093	141	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
59460	147	CTG ...	LTT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
56354	99	GTG ...	VEY ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil
59020	138	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
511230	105	CTG ...	LTF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
145707	78	CTG ...	LDN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
150457	45	TTG ...	LHS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
510218	96	TTG ...	LIV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, NSC
156807	69	GTG ...	VYA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
554566	54	GTG ...	VAL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
58560	48	ATG ...	MIY ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
55977	57	TTG ...	LGA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
510155	54	GTG ...	VKG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
510883	111	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
58277	180	CTG ...	LQF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
59135	30	CTG ...	LFR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Neutrophil
1177603	72	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
413998	99	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	MEF
1652366	39	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF

55917

ENSMUST00000148048

Dnajc11-211

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59460	147	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
55977	57	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
56354	99	GTG ...	VEY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
56040	78	TTG ...	LEF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
59135	30	CTG ...	LFR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
550277	51	ATG ...	MEL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
58277	180	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
55916	198	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
547064	45	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
57628	45	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
150457	45	TTG ...	LHS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
59020	138	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis

413999

ENSMUST00000128582

Dnajc11-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
509742	108	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
413998	99	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	C2C12
150785	120	CTG ...	LTD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
851	42	CTG ...	LII ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
55977	57	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
158536	69	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
147165	93	GTG ...	VFY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
549743	36	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
55916	198	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
59020	138	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
57628	45	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
56354	99	GTG ...	VEY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
513847	159	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
550194	45	ATG ...	MGN ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
154381	123	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
551417	54	ATG ...	MPG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
150761	57	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
58277	180	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
551370	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
158677	108	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
161071	51	GTG ...	VHR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
160015	99	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
59460	147	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
154837	78	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

852

ENSMUST00000139069

Dnajc11-207

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56040	78	TTG ...	LEF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, v6-5
146942	81	CTG ...	LYQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, R1E, Spleen_B_cell, v6-5
512434	84	ATG ...	MRN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell, v6-5
152150	90	CTG ...	LGI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Spleen_B_cell, v6-5
151901	93	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
55977	57	TTG ...	LGA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
163210	165	ATG ...	MLC ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
145618	90	CTG ...	LRV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Spleen_B_cell, v6-5
513847	159	CTG ...	LNR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
150457	45	TTG ...	LHS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
154837	78	GTG ...	VGP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
159703	63	GTG ...	VLH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Spleen_B_cell
1177603	72	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
159177	147	CTG ...	LCS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
161071	51	GTG ...	VHR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
149667	162	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
150785	120	CTG ...	LTD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
154381	123	CTG ...	LDK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Spleen_B_cell, v6-5
147165	93	GTG ...	VFY ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
548486	69	ATG ...	MCP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
549743	36	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1377713	180	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
149142	174	GTG ...	VSP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, v6-5
510675	96	ATG ...	MIH ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
57086	132	CTG ...	LPG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Spleen_B_cell, v6-5
55916	198	GTG ...	VTT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell, v6-5
510218	96	TTG ...	LIV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell, v6-5
823556	57	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
158536	69	CTG ...	LVV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
509740	87	ATG ...	MMR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell, v6-5
1081895	54	TTG ...	LHS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
545211	75	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
58277	180	CTG ...	LQF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell, v6-5
150761	57	TTG ...	LAV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
159629	72	GTG ...	VIP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
510474	75	ATG ...	MCR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
551370	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
512987	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
59020	138	GTG ...	VLA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell, v6-5
551417	54	ATG ...	MPG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC, v6-5
510883	111	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell, v6-5
554544	48	CTG ...	LGY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1017284	33	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
510705	87	GTG ...	VSG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, v6-5
158683	93	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
57628	45	GTG ...	VSI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Spleen_B_cell, v6-5
160015	99	CTG ...	LQW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, v6-5
56354	99	GTG ...	VEY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Spleen_B_cell, v6-5
509742	108	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
851	42	CTG ...	LII ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
1081290	42	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
545397	45	GTG ...	VPD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Neutrophil
158703	42	GTG ...	VLC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
550277	51	ATG ...	MEL ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
550194	45	ATG ...	MGN ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
160816	84	GTG ...	VLY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Spleen_B_cell, v6-5
59135	30	CTG ...	LFR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, v6-5
59460	147	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell, v6-5
511230	105	CTG ...	LTF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell, v6-5
158677	108	GTG ...	VGY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Spleen_B_cell, v6-5

58561

ENSMUST00000062904

Dnajc11-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
511230	105	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
550194	45	ATG ...	MGN ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
161625	45	TTG ...	LVS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell, v6-5
555813	93	ATG ...	MMR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, v6-5
548486	69	ATG ...	MCP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1227780	36	AGG ...	RSW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1232834	117	AGG ...	RQG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
554566	54	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
551370	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
554544	48	CTG ...	LGY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
555549	81	ATG ...	MKM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, v6-5
158683	93	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
166486	192	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
545211	75	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
58560	48	ATG ...	MIY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
555242	48	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
559034	90	ATG ...	MRN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, v6-5
549743	36	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
510155	54	GTG ...	VKG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF
1228155	66	AGG ...	RGL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
554661	45	CTG ...	LWA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
509740	87	ATG ...	MMR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
823556	57	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
516268	75	TTG ...	LEL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5
1227820	78	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
555290	75	ATG ...	MCP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, v6-5
1083497	150	ATG ...	MAT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
163210	165	ATG ...	MLC ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, v6-5
558063	102	TTG ...	LIV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, v6-5
156807	69	GTG ...	VYA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
515374	111	GTG ...	VSP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5
151193	63	TTG ...	LRD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1083966	171	CTG ...	LEV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, v6-5
1467	81	TTG ...	LRD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
551417	54	ATG ...	MPG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
1231782	150	AGG ...	RTP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
158703	42	GTG ...	VLC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
1224835	36	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
510675	96	ATG ...	MIH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
159177	147	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
515035	117	ATG ...	MRL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell, v6-5
512434	84	ATG ...	MRN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
515407	123	TTG ...	LHS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Spleen_B_cell, v6-5
512987	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
515813	69	CTG ...	LET ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E, Spleen_B_cell, v6-5
510218	96	TTG ...	LIV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
164401	168	ATG ...	MIY ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
555347	63	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E, v6-5
510883	111	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1081895	54	TTG ...	LHS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
514673	39	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
554990	111	CTG ...	LTF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC, R1E, v6-5

59606

ENSMUST00000123551

Dnajc11-202

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56040	78	TTG ...	LEF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1177603	72	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
60610	225	TTG ...	LTA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, Testis, v6-5
59605	108	TTG ...	LEF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
59135	30	CTG ...	LFR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
158683	93	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
150457	45	TTG ...	LHS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
151193	63	TTG ...	LRD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
149667	162	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

1381453

ENSMUST00000142198

Dnajc11-209

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56040	78	TTG ...	LEF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
154381	123	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
152150	90	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
59020	138	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
59460	147	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
58277	180	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
55916	198	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
163210	165	ATG ...	MLC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
59135	30	CTG ...	LFR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
158677	108	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
160015	99	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

822189

ENSMUST00000138738

Dnajc11-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
150457	45	TTG ...	LHS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1017284	33	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
59135	30	CTG ...	LFR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell

1468

ENSMUST00000147625

Dnajc11-210

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
166486	192	GTG ...	VIP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1887447	177	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
58560	48	ATG ...	MIY ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	R1E, v6-5
1467	81	TTG ...	LRD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	MEF, R1E, Skin_tumor, Spleen_B_cell
159629	72	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	R1E, v6-5
151193	63	TTG ...	LRD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	E14, Spleen_B_cell, v6-5
164401	168	ATG ...	MIY ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	B_cell, MEF, R1E, Spleen_B_cell, v6-5
156807	69	GTG ...	VYA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	E14

145708

ENSMUST00000133959

Dnajc11-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
159629	72	GTG ...	VIP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
510155	54	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
152093	141	GTG ...	VER ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
145707	78	CTG ...	LDN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
147340	144	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
151901	93	TTG ...	LSE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
156807	69	GTG ...	VYA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

57087

ENSMUST00000124955

Dnajc11-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
512987	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
145618	90	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
57086	132	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
159703	63	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
545397	45	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
160816	84	GTG ...	VLY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
146942	81	CTG ...	LYQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3

3023779

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
163210	165	ATG ...	MLC ...	Predicted	ATG		1	Samandi2017	sORF
515035	117	ATG ...	MRL ...	Predicted	ATG		1	Samandi2017	sORF
1083497	150	ATG ...	MAT ...	Predicted	ATG		1	Samandi2017	sORF
510675	96	ATG ...	MIH ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

103 ORFs
11 known transcripts
238 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1081895

TTG...

LHS...

TTG

Intronic
sORF
InCDS
NMD
Overlapping

BMDC, MEF, E14,
v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

59460

147

CTG...

LTT...

CTG

Intronic
sORF
ncRNA
Alternative
InCDS
NMD
Overlapping

Testis, 3T3, MEF,
Liver, E14, Spleen_B_cell,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

509742

108

CTG...

LLP...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Brain, E14,
MEF, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

56040

TTG...

LEF...

TTG

InCDS
NMD
Overlapping
sORF
ncRNA
Intronic

E14, R1E, v6-5,
Brain, Liver, 3T3,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		4	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

511230

105

CTG...

LTF...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

B_cell, 3T3, Brain,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

413998

ACG...

TAL...

ACG

Intronic
sORF

C2C12, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

550194

ATG...

MGN...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

E14, MEF, 3T3,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

146942

CTG...

LYQ...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, E14, R1E,
Spleen_B_cell, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

158703

GTG...

VLC...

GTG

Intronic
sORF
InCDS
Overlapping
NMD

3T3, Brain, MEF,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

150785

120

CTG...

LTD...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

159177

147

CTG...

LCS...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, MEF, E14,
v6-5, B_cell, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

161625

TTG...

LVS...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, MEF,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

851

CTG...

LII...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Brain, E14,
MEF, Neutrophil, Skin_tumor,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

554544

CTG...

LGY...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

3T3, MEF, B_cell,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

159629

GTG...

VIP...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, MEF, B_cell,
Brain, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		2	sORFs_org_Mouse

512434

ATG...

MRN...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Spleen_B_cell, v6-5, 3T3,
Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

545211

ATG...

MKM...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

3T3, Brain, B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

152150

CTG...

LGI...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic
ncRNA

Brain, E14, Spleen_B_cell,
v6-5, 3T3, MEF,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

555813

ATG...

MMR...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

548486

ATG...

MCP...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

B_cell, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

151901

TTG...

LSE...

TTG

InCDS
NMD
Overlapping
sORF
Intronic

Spleen_B_cell, MEF, Neutrophil,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		3	sORFs_org_Mouse
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1227780

AGG...

RSW...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

55977

TTG...

LGA...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

509740

ATG...

MMR...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

3T3, Brain, NSC,
B_cell, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		3	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

158677

108

GTG...

VGY...

GTG

Intronic
sORF
ncRNA
Alternative
InCDS
NMD
Overlapping

3T3, MEF, Brain,
Liver, E14, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

163210

165

ATG...

MLC...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

Glioma, Liver, MEF,
MESC, 3T3, B_cell,
Brain, v6-5,
E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
3023779	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

145618

CTG...

LRV...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, R1E, Spleen_B_cell,
v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

513847

159

CTG...

LNR...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

E14, MEF, Neutrophil,
Spleen_B_cell, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1232834

117

AGG...

RQG...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

147340

144

GTG...

VVE...

GTG

Intronic
sORF

Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

554566

GTG...

VAL...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, 3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

150457

TTG...

LHS...

TTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping
ncRNA

Brain, v6-5, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
822189	ENSMUST00000138738	Dnajc11-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

158536

CTG...

LVV...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

551370

ATG...

MTR...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

E14, MEF, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

147165

GTG...

VFY...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

549743

TTG...

LSM...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
Downstream
NMD

3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

55916

198

GTG...

VTT...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping
ncRNA

Brain, 3T3, MEF,
E14, Spleen_B_cell, v6-5,
Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

555549

ATG...

MKM...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

158683

CTG...

LEV...

CTG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

B_cell, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

154837

GTG...

VGP...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

166486

192

GTG...

VIP...

GTG

InCDS
Overlapping
sORF

3T3, Brain, B_cell,
E14, MEF, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		6	sORFs_org_Mouse

550277

ATG...

MEL...

ATG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, MEF, Glioma,
Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	strong	1	Johnstone2016

149142

174

GTG...

VSP...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF, Brain, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

159703

GTG...

VLH...

GTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, R1E, Spleen_B_cell,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

154381

123

CTG...

LDK...

CTG

ncRNA
sORF
Intronic
Alternative
InCDS
NMD
Overlapping

Liver, 3T3, MEF,
Brain, E14, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

58560

ATG...

MIY...

ATG

InCDS
Overlapping
sORF
Intronic

Testis, R1E, v6-5,
3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		2	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1177603

ATG...

MAT...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA
Intronic

v6-5, R1E, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

59020

138

GTG...

VLA...

GTG

Intronic
sORF
ncRNA
Alternative
InCDS
NMD
Overlapping

Brain, Liver, 3T3,
MEF, E14, Spleen_B_cell,
v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

161071

GTG...

VHR...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

555242

TTG...

LRL...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

559034

ATG...

MRN...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1377713

180

CTG...

LSV...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF, E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

149667

162

TTG...

LTA...

TTG

InCDS
NMD
Overlapping
sORF
ncRNA

E14, v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

547064

CTG...

LRG...

CTG

Intronic
sORF

3T3, MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

554661

CTG...

LWA...

CTG

Intronic
sORF
InCDS
Overlapping

3T3, NSC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

510155

GTG...

VKG...

GTG

Alternative
Overlapping
sORF
Upstream
Intronic

B_cell, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

57628

GTG...

VSI...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, 3T3, MEF,
Neutrophil, E14, Spleen_B_cell,
v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1655572

198

ATG...

MTA...

ATG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

151193

TTG...

LRD...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA

3T3, Brain, B_cell,
R1E, E14, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1228155

AGG...

RGL...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1509797

CTG...

LPL...

CTG

Intronic
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

60610

225

TTG...

LTA...

TTG

ncRNA
sORF

B_cell, Brain, E14,
Liver, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

160015

CTG...

LQW...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping
ncRNA

MEF, Brain, E14,
v6-5, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

512987

GTG...

VCS...

GTG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

3T3, Spleen_B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

823556

GTG...

VAS...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

B_cell, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

152093

141

GTG...

VER...

GTG

Intronic
sORF

Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

516268

TTG...

LEL...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1887447

177

CTG...

LKA...

CTG

sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		1	sORFs_org_Mouse

59605

108

TTG...

LEF...

TTG

ncRNA
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

510675

ATG...

MIH...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5,
E14,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse Johnstone2016
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
3023779	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

57086

132

CTG...

LPG...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, R1E, Spleen_B_cell,
v6-5, 3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1227820

AGG...

RRR...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

555290

ATG...

MCP...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

510218

TTG...

LIV...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Spleen_B_cell, v6-5, 3T3,
Brain, NSC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		3	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1083497

150

ATG...

MAT...

ATG

Alternative
InCDS
Overlapping
sORF

MEF, v6-5,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3023779	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

56354

GTG...

VEY...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, 3T3, MEF,
Neutrophil, Testis, E14,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

558063

102

TTG...

LIV...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

58277

180

CTG...

LQF...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic
ncRNA

E14, Spleen_B_cell, v6-5,
Testis, Liver, Brain,
3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

156807

GTG...

VYA...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, 3T3, MEF,
Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

515374

111

GTG...

VSP...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

150761

TTG...

LAV...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1083966

171

CTG...

LEV...

CTG

Alternative
InCDS
Overlapping
sORF

MEF, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1467

TTG...

LRD...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1017284

GTG...

VSP...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
822189	ENSMUST00000138738	Dnajc11-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

59135

CTG...

LFR...

CTG

Intronic
sORF
ncRNA
InCDS
NMD
Overlapping

Testis, B_cell, R1E,
Liver, Brain, E14,
v6-5, 3T3, MEF,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55917	ENSMUST00000148048	Dnajc11-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
822189	ENSMUST00000138738	Dnajc11-206	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
59606	ENSMUST00000123551	Dnajc11-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1381453	ENSMUST00000142198	Dnajc11-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		5	sORFs_org_Mouse

551417

ATG...

MPG...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

E14, MEF, R1E,
3T3, Glioma, Liver,
MESC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
413999	ENSMUST00000128582	Dnajc11-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse Johnstone2016

145707

CTG...

LDN...

CTG

Intronic
sORF

Brain, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
145708	ENSMUST00000133959	Dnajc11-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		3	sORFs_org_Mouse

510474

ATG...

MCR...

ATG

Downstream
NMD
sORF

Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse Johnstone2016

515035

117

ATG...

MRL...

ATG

sORF
Alternative
InCDS
Overlapping

3T3, B_cell,
Brain, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3023779	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1231782

150

AGG...

RTP...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

510883

111

ATG...

MRL...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Spleen_B_cell, v6-5, 3T3,
Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1224835

AGG...

RLL...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

510705

GTG...

VSG...

GTG

Alternative
Downstream
NMD
sORF

Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

1081290

TTG...

LRL...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

545397

GTG...

VPD...

GTG

Alternative
Downstream
NMD
sORF
Intronic

E14, Neutrophil, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

515407

123

TTG...

LHS...

TTG

Alternative
InCDS
Overlapping
sORF

MEF, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

160816

GTG...

VLY...

GTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, R1E, Spleen_B_cell,
v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852	ENSMUST00000139069	Dnajc11-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
57087	ENSMUST00000124955	Dnajc11-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

164401

168

ATG...

MIY...

ATG

sORF
InCDS
Overlapping

B_cell, MEF, R1E,
Spleen_B_cell, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1468	ENSMUST00000147625	Dnajc11-210	protein_coding	Ribo-seq		5	sORFs_org_Mouse
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

515813

CTG...

LET...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

555347

GTG...

VAS...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

514673

TTG...

LAS...

TTG

InCDS
Overlapping
sORF

3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

554990

111

CTG...

LTF...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58561	ENSMUST00000062904	Dnajc11-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1652366

TTG...

LLF...

TTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
510156	ENSMUST00000139555	Dnajc11-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

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