Transcript 413999

Transcript

ID CARD

MetamORF ID

413999

ENSMUST00000128582

Name

Dnajc11-204

Strand

Biotype

retained_intron

Start-end positions

151933739-151981218

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:230935

Aliases

Dnajc11,
E030019A03Rik, ENSMUSG00000039768, MGI:2443386,
NCBI:230935, OFF:Dnajc11

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
509742	108	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
413998	99	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	C2C12
150785	120	CTG ...	LTD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
851	42	CTG ...	LII ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
55977	57	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
158536	69	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
147165	93	GTG ...	VFY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
549743	36	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
55916	198	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
59020	138	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
57628	45	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
56354	99	GTG ...	VEY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
513847	159	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
550194	45	ATG ...	MGN ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
154381	123	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
551417	54	ATG ...	MPG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
150761	57	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
58277	180	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
551370	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
158677	108	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
161071	51	GTG ...	VHR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
160015	99	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
59460	147	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
154837	78	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

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