Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

852

ID

ENSMUST00000139069

Name

Dnajc11-207

Strand

+

Biotype

nonsense_mediated_decay

Start-end positions

151933744-151981222

CDS Start-stop positions

151933753-151978233

CDS Relative positions

-

Sequences

Transcript sequence

GTT ...

Gene

ID

NCBI:230935

Aliases

Dnajc11,
E030019A03Rik, ENSMUSG00000039768, MGI:2443386,
NCBI:230935, OFF:Dnajc11


Chr 4

ORFs

60 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

56040 78

TTG ...

LEF ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, R1E, v6-5
146942 81

CTG ...

LYQ ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, E14, R1E,
Spleen_B_cell, v6-5
512434 84

ATG ...

MRN ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell, v6-5
152150 90

CTG ...

LGI ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Spleen_B_cell,
v6-5
151901 93

TTG ...

LSE ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell
55977 57

TTG ...

LGA ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, R1E, Spleen_B_cell,
v6-5
163210 165

ATG ...

MLC ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
145618 90

CTG ...

LRV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E, Spleen_B_cell,
v6-5
513847 159

CTG ...

LNR ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5
150457 45

TTG ...

LHS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
154837 78

GTG ...

VGP ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
159703 63

GTG ...

VLH ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E, Spleen_B_cell
1177603 72

ATG ...

MAT ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
159177 147

CTG ...

LCS ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, v6-5
161071 51

GTG ...

VHR ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
149667 162

TTG ...

LTA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, v6-5
150785 120

CTG ...

LTD ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
154381 123

CTG ...

LDK ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Spleen_B_cell,
v6-5
147165 93

GTG ...

VFY ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
548486 69

ATG ...

MCP ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
549743 36

TTG ...

LSM ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF
1377713 180

CTG ...

LSV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, R1E
149142 174

GTG ...

VSP ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, v6-5
510675 96

ATG ...

MIH ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5
57086 132

CTG ...

LPG ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E, Spleen_B_cell,
v6-5
55916 198

GTG ...

VTT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Spleen_B_cell, v6-5
510218 96

TTG ...

LIV ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell, v6-5
823556 57

GTG ...

VAS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
158536 69

CTG ...

LVV ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
509740 87

ATG ...

MMR ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell, v6-5
1081895 54

TTG ...

LHS ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, v6-5
545211 75

ATG ...

MKM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
58277 180

CTG ...

LQF ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Spleen_B_cell, v6-5
150761 57

TTG ...

LAV ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
159629 72

GTG ...

VIP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain
510474 75

ATG ...

MCR ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5
551370 30

ATG ...

MTR ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF
512987 42

GTG ...

VCS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Spleen_B_cell
59020 138

GTG ...

VLA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Spleen_B_cell, v6-5
551417 54

ATG ...

MPG ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC, v6-5
510883 111

ATG ...

MRL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell, v6-5
554544 48

CTG ...

LGY ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1017284 33

GTG ...

VSP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
510705 87

GTG ...

VSG ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Spleen_B_cell, v6-5
158683 93

CTG ...

LEV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
57628 45

GTG ...

VSI ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Spleen_B_cell,
v6-5
160015 99

CTG ...

LQW ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, v6-5
56354 99

GTG ...

VEY ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Spleen_B_cell,
v6-5
509742 108

CTG ...

LLP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
v6-5
851 42

CTG ...

LII ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, Skin_tumor, Spleen_B_cell,
v6-5
1081290 42

TTG ...

LRL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
v6-5
545397 45

GTG ...

VPD ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14, Neutrophil
158703 42

GTG ...

VLC ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell
550277 51

ATG ...

MEL ...

Ribo-seq
ATG strong 1 Johnstone2016
    InCDS
    NMD
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
550194 45

ATG ...

MGN ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF, v6-5
160816 84

GTG ...

VLY ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E, Spleen_B_cell,
v6-5
59135 30

CTG ...

LFR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, v6-5
59460 147

CTG ...

LTT ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Spleen_B_cell, v6-5
511230 105

CTG ...

LTF ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Spleen_B_cell, v6-5
158677 108

GTG ...

VGY ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, Spleen_B_cell,
v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5