Gene NCBI:229709 | MetamORF

Gene

ID CARD

NCBI:229709

Aliases

1110034F20Rik
AA409031, AA414901, Ahcy-rs3
Ahcyl1, DCAL, ENSMUSG00000027893
Irbit, MGI:2385184, NCBI:229709
OFF:Ahcyl1

Chromosome

Transcripts

130 ORFs
8 known transcripts
225 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

52755

ENSMUST00000138116

Ahcyl1-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
503471	36	CTG ...	LVC ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
413181	180	AAG ...	KEI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	C2C12
129627	36	GTG ...	VST ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, NSC
504020	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
504179	36	CTG ...	LPA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, NSC, v6-5
503129	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, NSC, v6-5
130319	63	ATG ...	MIS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, NSC, v6-5
52754	126	CTG ...	LAG ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, MEF, Spleen_B_cell, Testis
503748	165	CTG ...	LWP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
127044	75	TTG ...	LRP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC, v6-5
503872	150	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
413280	174	ATC ...	IED ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12
503048	171	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1014752	126	GTG ...	VKN ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
895071	30	ATC ...	ILH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
507393	48	CTG ...	LCE ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, NSC, v6-5
1013355	111	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
136872	39	CTG ...	LTR ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, NSC
133812	39	GTG ...	VAE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
506674	63	ATG ...	MRF ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
894317	36	ACG ...	TRC ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
503615	69	CTG ...	LMM ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
137949	45	TTG ...	LTA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, NSC, v6-5
504527	60	TTG ...	LCP ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
140989	63	GTG ...	VPW ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, NSC
506747	177	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
502819	66	ATG ...	MMR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
892797	171	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
894707	54	AAG ...	KAG ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
893793	177	ACG ...	TPR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
504437	30	CTG ...	LCQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, v6-5
504718	78	CTG ...	LFF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF
504788	42	GTG ...	VPL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
139363	87	TTG ...	LLG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5

3026848

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896088	165	ATG ...	MTK ...	Predicted	ATG		1	Samandi2017	sORF
143342	186	ATG ...	MTC ...	Predicted	ATG		1	Samandi2017	sORF
507902	186	ATG ...	MTC ...	Predicted	ATG		1	Samandi2017	sORF

535759

ENSMUST00000137583

Ahcyl1-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
133534	48	ATG ...	MNM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
53976	108	TTG ...	LHL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC
131255	105	ATG ...	MLG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
140971	39	TTG ...	LPA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
134557	87	CTG ...	LCP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC
51891	81	CTG ...	LTE ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
338	84	TTG ...	LAL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
51814	33	GTG ...	VYL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
55	78	CTG ...	LIE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
818940	42	ATG ...	MCT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
53837	72	CTG ...	LTD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
133124	42	ATG ...	MLP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
136140	48	CTG ...	LGL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, NSC

127357

ENSMUST00000144864

Ahcyl1-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1219865	48	AGG ...	RAA ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1649115	96	ATG ...	MFE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
127356	54	CTG ...	LLC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
1552933	75	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
53976	108	TTG ...	LHL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, v6-5
1222184	54	AAG ...	KYL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
133124	42	ATG ...	MLP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
137123	60	GTG ...	VYV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, NSC
55	78	CTG ...	LIE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, v6-5
1173391	75	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
135169	87	CTG ...	LFF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
140130	39	ATG ...	MSS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC
54217	39	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
136140	48	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, v6-5
1551685	87	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
52813	42	TTG ...	LVG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, v6-5
1220981	63	AGG ...	RKG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
140971	39	TTG ...	LPA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
536695	33	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
127692	45	TTG ...	LCA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, MEF, NSC
51891	81	CTG ...	LTE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, v6-5
538440	36	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1172479	87	ATG ...	MSP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1012953	96	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1647590	99	ATG ...	MMF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1222519	33	ACG ...	TFS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
133534	48	ATG ...	MNM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
128986	45	ATG ...	MGA ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
131255	105	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
134557	87	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
338	84	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, v6-5
1222308	60	AGG ...	RDA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
53837	72	CTG ...	LTD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, MEF, v6-5
54696	30	ATG ...	MKS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
51814	33	GTG ...	VYL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, v6-5
137806	51	CTG ...	LCC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
818940	42	ATG ...	MCT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, v6-5
1220656	33	ATA ...	ICC ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14

563

ENSMUST00000029490

Ahcyl1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
507873	117	CTG ...	LQH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, Spleen_B_cell
133124	42	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
142240	69	ATG ...	MIL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
507678	192	TTG ...	LLM ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
143153	42	TTG ...	LCA ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
140130	39	ATG ...	MSS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
818472	270	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
133534	48	ATG ...	MNM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
817517	180	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
537677	36	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1651510	33	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
143640	42	TTG ...	LFF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, v6-5
503048	171	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
895942	159	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
142637	39	GTG ...	VLC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
130319	63	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
895407	42	ATA ...	ITC ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
748543	39	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
128986	45	ATG ...	MGA ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC
504020	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
144393	63	CTG ...	LLP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
505302	183	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, Spleen_B_cell
894317	36	ACG ...	TRC ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
895810	66	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
54881	42	TTG ...	LVG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Testis, v6-5
54217	39	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
562	45	TTG ...	LIT ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
502819	66	ATG ...	MMR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
140989	63	GTG ...	VPW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
895880	252	ACG ...	TPR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
144165	60	CTG ...	LVF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Spleen_B_cell
506674	63	ATG ...	MRF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
541252	42	TTG ...	LTA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, v6-5
52813	42	TTG ...	LVG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
820311	225	TTG ...	LRV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
541627	99	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC, v6-5
507793	189	CTG ...	LMT ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
508411	60	ATG ...	MIS ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
143893	51	TTG ...	LTP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
1219356	33	AGG ...	RER ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
817278	297	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
136872	39	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
54696	30	ATG ...	MKS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC
143747	75	ATG ...	MCT ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
504437	30	CTG ...	LCQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
508329	150	CTG ...	LAG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
143342	186	ATG ...	MTC ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
506747	177	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
818940	42	ATG ...	MCT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
140971	39	TTG ...	LPA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
127692	45	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
139363	87	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
506759	210	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	B_cell, Spleen_B_cell
536695	33	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
141679	75	ATG ...	MSM ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
508663	84	TTG ...	LLG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, Spleen_B_cell, v6-5
816890	219	GTG ...	VAE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
820055	285	GTG ...	VWR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
543274	39	GTG ...	VGN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
507789	48	TTG ...	LDA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, Spleen_B_cell
538440	36	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
141719	57	GTG ...	VFT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Spleen_B_cell
137123	60	GTG ...	VYV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
821671	33	GTG ...	VST ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, NSC, v6-5
896088	165	ATG ...	MTK ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
543939	105	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, NSC, v6-5
507902	186	ATG ...	MTC ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
1223874	93	AGG ...	RDA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

ENSMUST00000138091

Ahcyl1-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1012972	111	CTG ...	LNE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
504179	36	CTG ...	LPA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	Liver, MEF, Spleen_B_cell
135169	87	CTG ...	LFF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
1014015	123	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
503129	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	NMD sORF	Brain, Liver, MEF, Spleen_B_cell
137949	45	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
503147	33	GTG ...	VEE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, MEF, NSC, Spleen_B_cell
52813	42	TTG ...	LVG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, Testis
53976	108	TTG ...	LHL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	Brain, R1E, Spleen_B_cell, Testis
128986	45	ATG ...	MGA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
504718	78	CTG ...	LFF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Spleen_B_cell
136140	48	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
504782	108	CTG ...	LDD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
507393	48	CTG ...	LCE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	NMD sORF	MEF, Spleen_B_cell
17048	57	GTG ...	VFK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	NMD sORF	3T3, Brain, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell
504437	30	CTG ...	LCQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
502819	66	ATG ...	MMR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	NMD sORF	Liver, Spleen_B_cell
140971	39	TTG ...	LPA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
1728586	36	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
51891	81	CTG ...	LTE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, R1E, Spleen_B_cell, Testis
129627	36	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
127044	75	TTG ...	LRP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, Liver, MEF
506674	63	ATG ...	MRF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	NMD sORF	Liver, Spleen_B_cell
140989	63	GTG ...	VPW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, Liver, MEF
140130	39	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
139363	87	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
504788	42	GTG ...	VPL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Spleen_B_cell
503471	36	CTG ...	LVC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF, Spleen_B_cell
137806	51	CTG ...	LCC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1014548	117	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
504527	60	TTG ...	LCP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Spleen_B_cell
53837	72	CTG ...	LTD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, R1E, Spleen_B_cell, Testis
504020	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Liver, Spleen_B_cell
54217	39	GTG ...	VGN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF, Testis
54696	30	ATG ...	MKS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	NMD sORF	Brain, MEF, Spleen_B_cell, Testis
127356	54	CTG ...	LLC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
503615	69	CTG ...	LMM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	Liver, Spleen_B_cell
1014044	207	CTG ...	LYQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
127692	45	TTG ...	LCA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	MEF, R1E, Spleen_B_cell
1014805	120	GTG ...	VVK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
51814	33	GTG ...	VYL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, R1E, Testis
130319	63	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, Spleen_B_cell
1012953	96	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
137123	60	GTG ...	VYV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	R1E, Spleen_B_cell
55	78	CTG ...	LIE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, R1E, Skin_tumor, Spleen_B_cell, Testis
338	84	TTG ...	LAL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	Brain, R1E, Skin_tumor, Spleen_B_cell, Testis

127045

ENSMUST00000153623

Ahcyl1-208

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
543939	105	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
507393	48	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
139363	87	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
140989	63	GTG ...	VPW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	3T3, Brain
508329	150	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
541252	42	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, BMDC
508663	84	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
144049	192	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
504020	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
127044	75	TTG ...	LRP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Brain
541627	99	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
143334	189	CTG ...	LMT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
507873	117	CTG ...	LQH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
130319	63	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
129627	36	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain
143342	186	ATG ...	MTC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
137949	45	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain

55209

ENSMUST00000153530

Ahcyl1-207

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55208	75	CTG ...	LTD ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
55532	84	CTG ...	LTE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
144078	51	CTG ...	LGL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, R1E

538563

ENSMUST00000151935

Ahcyl1-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
137806	51	CTG ...	LCC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC, v6-5
537677	36	CTG ...	LLS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, NSC
1012953	96	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
127356	54	CTG ...	LLC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC
748543	39	GTG ...	VLL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
54696	30	ATG ...	MKS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC

ORFs

130 ORFs
8 known transcripts
225 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

503471

CTG...

LVC...

CTG

Intronic
sORF
NMD

Brain, E14, Liver,
MEF, NSC, v6-5,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

413181

180

AAG...

KEI...

AAG

Intronic
sORF

C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

896088

165

ATG...

MTK...

ATG

sORF
Alternative
Downstream
Overlapping

BMDC, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3026848	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse Johnstone2016

129627

GTG...

VST...

GTG

Intronic
sORF
NMD

B_cell, BMDC, MEF,
NSC, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

133534

ATG...

MNM...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, E14, MEF,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1219865

AGG...

RAA...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

507873

117

CTG...

LQH...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, MEF,
NSC, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

504020

CTG...

LHP...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

Brain, E14, Liver,
MEF, NSC, v6-5,
B_cell, 3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	7	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

1649115

ATG...

MFE...

ATG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

127356

CTG...

LLC...

CTG

Intronic
sORF
NMD

Brain, 3T3, E14,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
538563	ENSMUST00000151935	Ahcyl1-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

504179

CTG...

LPA...

CTG

Intronic
sORF
NMD

B_cell, BMDC, Brain,
E14, MEF, NSC,
v6-5, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	8	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

1012972

111

CTG...

LNE...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1552933

CTG...

LPL...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

133124

ATG...

MLP...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, Brain, v6-5,
3T3, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

53976

108

TTG...

LHL...

TTG

Intronic
sORF
NMD

Brain, Liver, MEF,
v6-5, 3T3, B_cell,
E14, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		5	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

135169

CTG...

LFF...

CTG

NMD
sORF
Intronic

Brain, Spleen_B_cell, E14,
MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		4	sORFs_org_Mouse

1222184

AAG...

KYL...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

142240

ATG...

MIL...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse

507678

192

TTG...

LLM...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse

503129

GTG...

VLR...

GTG

Intronic
sORF
NMD

B_cell, MEF, Neutrophil,
NSC, v6-5, Brain,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

143153

TTG...

LCA...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
Liver, MEF, NSC,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		11	sORFs_org_Mouse

1014015

123

CTG...

LSC...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

130319

ATG...

MIS...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

B_cell, NSC, v6-5,
E14, MEF, Spleen_B_cell,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

543939

105

CTG...

LRL...

CTG

sORF
Alternative
InCDS
Overlapping

3T3, B_cell, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

52754

126

CTG...

LAG...

CTG

Intronic
sORF

B_cell, BMDC, Brain,
MEF, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	strong	7	sORFs_org_Mouse

55208

CTG...

LTD...

CTG

ncRNA
sORF

Brain, Liver, MEF,
R1E, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55209	ENSMUST00000153530	Ahcyl1-207	processed_transcript	Ribo-seq		8	sORFs_org_Mouse

140130

ATG...

MSS...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

3T3, BMDC, Glioma,
Liver, MEF, MESC,
B_cell, Brain, NSC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

137949

TTG...

LTA...

TTG

NMD
sORF
Intronic

MEF, B_cell, BMDC,
NSC, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

137123

GTG...

VYV...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

B_cell, Brain, E14,
MEF, NSC, 3T3,
BMDC, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

818472

270

CTG...

LRG...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

CTG...

LIE...

CTG

Intronic
sORF
NMD

B_cell, Brain, E14,
Liver, v6-5, 3T3,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq		6	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

503147

GTG...

VEE...

GTG

NMD
sORF

3T3, Brain, MEF,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

1173391

CTG...

LFP...

CTG

Intronic
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

503748

165

CTG...

LWP...

CTG

Intronic
sORF

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

817517

180

CTG...

LLL...

CTG

sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

537677

CTG...

LLS...

CTG

InCDS
Overlapping
sORF
Intronic

3T3, BMDC, E14,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
538563	ENSMUST00000151935	Ahcyl1-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

1651510

TTG...

LRL...

TTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

52813

TTG...

LVG...

TTG

NMD
sORF
Intronic
Alternative
InCDS
Overlapping

MEF, Testis, B_cell,
E14, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		4	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

137806

CTG...

LCC...

CTG

Intronic
sORF
NMD

3T3, E14, NSC,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
538563	ENSMUST00000151935	Ahcyl1-206	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

507393

CTG...

LCE...

CTG

sORF
NMD
Intronic

3T3, MEF, Spleen_B_cell,
B_cell, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

143640

TTG...

LFF...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
E14, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse

127044

TTG...

LRP...

TTG

Intronic
sORF
NMD

B_cell, Brain, MEF,
NSC, v6-5, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

55532

CTG...

LTE...

CTG

ncRNA
sORF

BMDC, Brain, Liver,
MEF, R1E, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55209	ENSMUST00000153530	Ahcyl1-207	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

131255

105

ATG...

MLG...

ATG

Intronic
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

128986

ATG...

MGA...

ATG

NMD
sORF
InCDS
Overlapping
Intronic

Brain, Spleen_B_cell, 3T3,
BMDC, E14, Glioma,
Liver, MEF, MESC,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse Johnstone2016
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	strong	6	sORFs_org_Mouse

504718

CTG...

LFF...

CTG

NMD
sORF
Intronic

Brain, Spleen_B_cell, E14,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

503872

150

CTG...

LSG...

CTG

Intronic
sORF

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

413280

174

ATC...

IED...

ATC

Intronic
sORF

BMDC, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

503048

171

CTG...

LVL...

CTG

sORF
Upstream
Intronic

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

139363

TTG...

LLG...

TTG

sORF
NMD
Alternative
InCDS
Overlapping
Intronic

3T3, Brain, MEF,
B_cell, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

136140

CTG...

LGL...

CTG

NMD
sORF
Intronic

Brain, R1E, Liver,
v6-5, 3T3, B_cell,
E14, MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

504782

108

CTG...

LDD...

CTG

NMD
sORF

3T3, Brain, Liver,
MEF, NSC, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

54217

GTG...

VGN...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

v6-5, 3T3, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

895942

159

AAG...

KQS...

AAG

Alternative
Downstream
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1014752

126

GTG...

VKN...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1551685

CTG...

LTS...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

142637

GTG...

VLC...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1220981

AGG...

RKG...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

17048

GTG...

VFK...

GTG

NMD
sORF

3T3, Brain, Liver,
MEF, NSC, R1E,
Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		9	sORFs_org_Mouse

140971

TTG...

LPA...

TTG

Intronic
sORF
NMD
Alternative
InCDS
Overlapping

Brain, 3T3, E14,
MEF, R1E, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

895407

ATA...

ITC...

ATA

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

748543

GTG...

VLL...

GTG

InCDS
Overlapping
sORF
Intronic

3T3, E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
538563	ENSMUST00000151935	Ahcyl1-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

536695

CTG...

LPR...

CTG

Intronic
sORF
InCDS
Overlapping

E14, MEF, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

504437

CTG...

LCQ...

CTG

NMD
sORF
InCDS
Overlapping
Intronic

Spleen_B_cell, B_cell, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

127692

TTG...

LCA...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

B_cell, Brain, Liver,
MEF, NSC, 3T3,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		7	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

144393

CTG...

LLP...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

505302

183

GTG...

VLL...

GTG

sORF
Upstream

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

140989

GTG...

VPW...

GTG

sORF
Alternative
InCDS
Overlapping
NMD
Intronic

3T3, Brain, B_cell,
Liver, MEF, BMDC,
E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

895071

ATC...

ILH...

ATC

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

134557

CTG...

LCP...

CTG

Intronic
sORF

3T3, E14, MEF,
NSC, B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

51891

CTG...

LTE...

CTG

Intronic
sORF
NMD

Brain, Liver, MEF,
v6-5, 3T3, E14,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		5	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

502819

ATG...

MMR...

ATG

NMD
sORF
Alternative
InCDS
Overlapping
Intronic

Liver, Spleen_B_cell, B_cell,
Brain, E14, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

538440

CTG...

LLP...

CTG

Intronic
sORF
InCDS
Overlapping

E14, MEF, NSC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

508329

150

CTG...

LAG...

CTG

sORF
Alternative
InCDS
Overlapping

3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

541252

TTG...

LTA...

TTG

sORF
Alternative
InCDS
Overlapping

3T3, BMDC, B_cell,
MEF, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

508663

TTG...

LLG...

TTG

sORF
Alternative
InCDS
Overlapping

3T3, B_cell, MEF,
NSC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

894317

ACG...

TRC...

ACG

InCDS
Overlapping
sORF
Intronic

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1728586

CTG...

LFC...

CTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1013355

111

TTG...

LSR...

TTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1172479

ATG...

MSP...

ATG

Intronic
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

895810

ATT...

ILL...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

144078

CTG...

LGL...

CTG

ncRNA
sORF

3T3, Brain, Liver,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55209	ENSMUST00000153530	Ahcyl1-207	processed_transcript	Ribo-seq		7	sORFs_org_Mouse

54881

TTG...

LVG...

TTG

InCDS
Overlapping
sORF

3T3, E14, MEF,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1012953

CTG...

LAT...

CTG

Intronic
sORF
NMD

Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
538563	ENSMUST00000151935	Ahcyl1-206	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

562

TTG...

LIT...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, Skin_tumor, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse

136872

CTG...

LTR...

CTG

Intronic
sORF
InCDS
Overlapping

3T3, B_cell, Brain,
MEF, NSC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	10	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

506674

ATG...

MRF...

ATG

NMD
sORF
Alternative
InCDS
Overlapping
Intronic

Liver, Spleen_B_cell, B_cell,
Brain, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

133812

GTG...

VAE...

GTG

Intronic
sORF

Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

144049

192

TTG...

LLM...

TTG

sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

895880

252

ACG...

TPR...

ACG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

144165

CTG...

LVF...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
Liver, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse

1647590

ATG...

MMF...

ATG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1222519

ACG...

TFS...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

338

TTG...

LAL...

TTG

Intronic
sORF
NMD

3T3, E14, MEF,
Neutrophil, NSC, B_cell,
Brain, Liver, v6-5,
R1E, Skin_tumor, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq		6	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		4	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

503615

CTG...

LMM...

CTG

Intronic
sORF
NMD

B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

820311

225

TTG...

LRV...

TTG

sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

541627

CTG...

LES...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, NSC, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

507793

189

CTG...

LMT...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse

508411

ATG...

MIS...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, Glioma,
Liver, MEF, MESC,
NSC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse Johnstone2016

504788

GTG...

VPL...

GTG

NMD
sORF
Intronic

Brain, MEF, Spleen_B_cell,
E14, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

143893

TTG...

LTP...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

51814

GTG...

VYL...

GTG

Intronic
sORF
NMD

3T3, E14, MEF,
Neutrophil, NSC, B_cell,
Brain, Liver, v6-5,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq		5	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		4	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1014548

117

GTG...

VKL...

GTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1219356

AGG...

RER...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

817278

297

GTG...

VRA...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

504527

TTG...

LCP...

TTG

Intronic
sORF
NMD

Brain, E14, MEF,
NSC, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

54696

ATG...

MKS...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

B_cell, BMDC, Glioma,
Liver, MEF, MESC,
Brain, Spleen_B_cell, Testis,
3T3, E14, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse Johnstone2016
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
538563	ENSMUST00000151935	Ahcyl1-206	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

143747

ATG...

MCT...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse Johnstone2016

143342

186

ATG...

MTC...

ATG

Alternative
InCDS
Overlapping
sORF

Glioma, Liver, MEF,
MESC, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	Johnstone2016
3026848	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

53837

CTG...

LTD...

CTG

NMD
sORF
Intronic

Brain, R1E, Spleen_B_cell,
Testis, B_cell, Liver,
MEF, v6-5, 3T3,
E14, Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

506747

177

TTG...

LLL...

TTG

sORF
Upstream
Intronic

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

818940

ATG...

MCT...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, MEF, B_cell,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
535759	ENSMUST00000137583	Ahcyl1-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse

1222308

AGG...

RDA...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

506759

210

GTG...

VAA...

GTG

sORF
Upstream

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

892797

171

CTG...

LMT...

CTG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

143334

189

CTG...

LMT...

CTG

sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127045	ENSMUST00000153623	Ahcyl1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1014044

207

CTG...

LYQ...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

141679

ATG...

MSM...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse Johnstone2016

816890

219

GTG...

VAE...

GTG

sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

507902

186

ATG...

MTC...

ATG

sORF
Alternative
InCDS
Overlapping

B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, NSC,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3026848	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse Johnstone2016

1014805

120

GTG...

VVK...

GTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56	ENSMUST00000138091	Ahcyl1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

820055

285

GTG...

VWR...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

894707

AAG...

KAG...

AAG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

893793

177

ACG...

TPR...

ACG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52755	ENSMUST00000138116	Ahcyl1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

543274

GTG...

VGN...

GTG

InCDS
Overlapping
sORF

3T3, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

507789

TTG...

LDA...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, MEF,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

141719

GTG...

VFT...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, Liver,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

821671

GTG...

VST...

GTG

Alternative
InCDS
Overlapping
sORF

B_cell, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1220656

ATA...

ICC...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127357	ENSMUST00000144864	Ahcyl1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1223874

AGG...

RDA...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
563	ENSMUST00000029490	Ahcyl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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