Transcript 535759

Transcript

ID CARD

MetamORF ID

535759

ENSMUST00000137583

Name

Ahcyl1-202

Strand

Biotype

retained_intron

Start-end positions

107665392-107667483

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:229709

Aliases

1110034F20Rik,
AA409031, AA414901, Ahcy-rs3,
Ahcyl1, DCAL, ENSMUSG00000027893,
Irbit, MGI:2385184, NCBI:229709,
OFF:Ahcyl1

Chr 3

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
133534	48	ATG ...	MNM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
53976	108	TTG ...	LHL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC
131255	105	ATG ...	MLG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
140971	39	TTG ...	LPA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
134557	87	CTG ...	LCP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC
51891	81	CTG ...	LTE ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
338	84	TTG ...	LAL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
51814	33	GTG ...	VYL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
55	78	CTG ...	LIE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
818940	42	ATG ...	MCT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
53837	72	CTG ...	LTD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC
133124	42	ATG ...	MLP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
136140	48	CTG ...	LGL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, NSC

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