Transcript 127045

Transcript

ID CARD

MetamORF ID

127045

ENSMUST00000153623

Name

Ahcyl1-208

Strand

Biotype

protein_coding

Start-end positions

107671148-107695963

CDS Start-stop positions

-107677810

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:229709

Aliases

1110034F20Rik,
AA409031, AA414901, Ahcy-rs3,
Ahcyl1, DCAL, ENSMUSG00000027893,
Irbit, MGI:2385184, NCBI:229709,
OFF:Ahcyl1

Chr 3

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
543939	105	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
507393	48	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
139363	87	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
140989	63	GTG ...	VPW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	3T3, Brain
508329	150	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
541252	42	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, BMDC
508663	84	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
144049	192	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
504020	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
127044	75	TTG ...	LRP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Brain
541627	99	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
143334	189	CTG ...	LMT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
507873	117	CTG ...	LQH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
130319	63	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
129627	36	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain
143342	186	ATG ...	MTC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
137949	45	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain

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