Gene NCBI:19361 | MetamORF

Gene

ID CARD

NCBI:19361

Aliases

AV304093
ENSMUSG00000027323, MGI:97890, NCBI:19361
OFF:Rad51, Rad51, Rad51a
Reca

Chromosome

Transcripts

64 ORFs
8 known transcripts
115 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

492584

ENSMUST00000152327

Rad51-207

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
497335	63	GTG ...	VWC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
729288	60	ATG ...	MRE ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
493837	75	TTG ...	LTV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1054603	36	GTG ...	VFF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil
492583	69	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
499036	30	CTG ...	LLL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1053434	117	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil
1053282	57	GTG ...	VEE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
44351	132	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
498770	117	CTG ...	LRK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
48652	174	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
742471	87	ATG ...	MEQ ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
495098	123	CTG ...	LYL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
48706	147	GTG ...	VWP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Neutrophil, Spleen_B_cell, v6-5
812262	96	GTG ...	VEL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, v6-5
811021	84	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, v6-5
497937	66	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1052448	123	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
494858	57	GTG ...	VQI ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
494780	66	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
496200	39	TTG ...	LTP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1165641	156	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
44238	132	CTG ...	LKF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell, v6-5
497810	42	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
496286	114	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
499002	42	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
44791	111	CTG ...	LTE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell, v6-5
499659	60	GTG ...	VKG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
496523	54	GTG ...	VQS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
808485	90	TTG ...	LRL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
498661	72	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
495809	72	GTG ...	VAR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	NMD sORF Upstream	MEF, Neutrophil, Spleen_B_cell, v6-5

412232

ENSMUST00000140939

Rad51-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1214504	36	AAG ...	KKV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
1213793	123	GTG ...	VKW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
44791	111	CTG ...	LTE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	BMDC, E14, MEF
1053434	117	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
497810	42	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
498661	72	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
494780	66	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	E14
1207782	66	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
495809	72	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	E14, MEF
1207992	51	ATA ...	ILQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	E14
1210691	150	AGG ...	RSN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
810560	63	TTG ...	LEN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
1211197	75	AAG ...	KFW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
44238	132	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	C2C12, E14

499869

ENSMUST00000028795

Rad51-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
494780	66	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
730130	39	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
492583	69	GTG ...	VVE ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
742471	87	ATG ...	MEQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
729288	60	ATG ...	MRE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
810560	63	TTG ...	LEN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, R1E
502156	48	TTG ...	LEG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, Spleen_B_cell, v6-5
737428	75	CTG ...	LPF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
499036	30	CTG ...	LLL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, R1E
497810	42	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
494858	57	GTG ...	VQI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
501566	168	TTG ...	LRL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
48706	147	GTG ...	VWP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
812262	96	GTG ...	VEL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, R1E
501154	141	TTG ...	LEN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, R1E
496200	39	TTG ...	LTP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
499002	42	CTG ...	LAP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
497937	66	GTG ...	VEV ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
495809	72	GTG ...	VAR ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, R1E
1162891	30	GTG ...	VKP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
499868	174	GTG ...	VEL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
501401	162	CTG ...	LDL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
497335	63	GTG ...	VWC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
496523	54	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
501914	126	CTG ...	LGR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, R1E
808485	90	TTG ...	LRL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, R1E
744245	36	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
499659	60	GTG ...	VKG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
44238	132	CTG ...	LKF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
744384	69	CTG ...	LQI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
811120	48	CTG ...	LGR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, R1E
811021	84	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, R1E
493837	75	TTG ...	LTV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
733836	81	CTG ...	LRQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E

44352

ENSMUST00000141389

Rad51-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
44351	132	TTG ...	LVP ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, Testis, v6-5
1211014	111	ACG ...	TAT ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1162891	30	GTG ...	VKP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1211387	33	AAG ...	KSW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
730130	39	CTG ...	LSF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, v6-5
733836	81	CTG ...	LRQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1162277	99	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1213838	78	AGG ...	RQQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1053995	48	CTG ...	LDK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
499002	42	CTG ...	LAP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil
1208525	87	ATA ...	INI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14

44239

ENSMUST00000110828

Rad51-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
44238	132	CTG ...	LKF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
497937	66	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1208962	57	ATT ...	IDT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
48706	147	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
48652	174	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
966730	93	ATT ...	IDR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
44791	111	CTG ...	LTE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

501155

ENSMUST00000151406

Rad51-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
499659	60	GTG ...	VKG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
729288	60	ATG ...	MRE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	v6-5
501154	141	TTG ...	LEN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	E14, MEF, Spleen_B_cell, v6-5
810560	63	TTG ...	LEN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	E14, MEF, v6-5
497937	66	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	v6-5
1211802	42	AGG ...	REH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
493837	75	TTG ...	LTV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	v6-5
492583	69	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	v6-5
811120	48	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, v6-5
501914	126	CTG ...	LGR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell, v6-5

1052698

ENSMUST00000143934

Rad51-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1162647	60	CTG ...	LGQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
495098	123	CTG ...	LYL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
498770	117	CTG ...	LRK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
496286	114	GTG ...	VVI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5

1207010

ENSMUST00000154683

Rad51-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1207840	90	ATA ...	ICA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
496286	114	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1213310	72	AGG ...	RAG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

ORFs

64 ORFs
8 known transcripts
115 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

497335

GTG...

VWC...

GTG

Alternative
NMD
sORF
Upstream

Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

729288

ATG...

MRE...

ATG

InCDS
NMD
Overlapping
sORF

Glioma, Liver, MEF,
MESC, 3T3, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

493837

TTG...

LTV...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

Spleen_B_cell, v6-5, 3T3,
B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

1214504

AAG...

KKV...

AAG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

494780

TTG...

LKQ...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, R1E, E14,
MEF, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	moderate	5	sORFs_org_Mouse
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

730130

CTG...

LSF...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, R1E, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

492583

GTG...

VVE...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, B_cell, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

44351

132

TTG...

LVP...

TTG

Intronic
sORF
InCDS
NMD
Overlapping

E14, MEF, Neutrophil,
Testis, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1054603

GTG...

VFF...

GTG

Alternative
NMD
Overlapping
sORF
Upstream

E14, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

499036

CTG...

LLL...

CTG

InCDS
NMD
Overlapping
sORF

E14, MEF, Spleen_B_cell,
v6-5, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

44238

132

CTG...

LKF...

CTG

Intronic
sORF
Alternative
NMD
Upstream

Testis, MEF, Spleen_B_cell,
v6-5, 3T3, C2C12,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1053434

117

GTG...

VRR...

GTG

NMD
sORF
Upstream

Neutrophil, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

742471

ATG...

MEQ...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

3T3, E14, R1E,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016

1053282

GTG...

VEE...

GTG

InCDS
NMD
Overlapping
sORF

E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

1211014

111

ACG...

TAT...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

497937

GTG...

VEV...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

E14, Spleen_B_cell, v6-5,
3T3, B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

498770

117

CTG...

LRK...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Spleen_B_cell, E14, MEF,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
1052698	ENSMUST00000143934	Rad51-205	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

1162891

GTG...

VKP...

GTG

Intronic
sORF
InCDS
Overlapping

MEF, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

810560

TTG...

LEN...

TTG

InCDS
Overlapping
sORF

B_cell, Brain, R1E,
E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

499659

GTG...

VKG...

GTG

sORF
Alternative
InCDS
Overlapping
NMD

v6-5, 3T3, B_cell,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

502156

TTG...

LEG...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

48652

174

CTG...

LGK...

CTG

Alternative
NMD
sORF
Upstream
Intronic

Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1162647

CTG...

LGQ...

CTG

Intronic
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1052698	ENSMUST00000143934	Rad51-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1213793

123

GTG...

VKW...

GTG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

44791

111

CTG...

LTE...

CTG

sORF
Alternative
NMD
Upstream
Intronic

BMDC, E14, MEF,
Spleen_B_cell, v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

737428

CTG...

LPF...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

495098

123

CTG...

LYL...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Spleen_B_cell, E14, MEF,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
1052698	ENSMUST00000143934	Rad51-205	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

1208962

ATT...

IDT...

ATT

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

497810

CTG...

LPG...

CTG

Alternative
sORF
Upstream
NMD

R1E, E14, MEF,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

48706

147

GTG...

VWP...

GTG

Alternative
NMD
sORF
Upstream
Intronic

MEF, Neutrophil, Spleen_B_cell,
v6-5, 3T3, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

494858

GTG...

VQI...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, R1E, E14,
MEF, Neutrophil, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse

501566

168

TTG...

LRL...

TTG

InCDS
Overlapping
sORF

3T3, B_cell, E14,
MEF, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

812262

GTG...

VEL...

GTG

InCDS
NMD
Overlapping
sORF

E14, MEF, v6-5,
B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

501154

141

TTG...

LEN...

TTG

sORF
InCDS
Overlapping

E14, MEF, Spleen_B_cell,
v6-5, 3T3, B_cell,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

811021

CTG...

LDL...

CTG

InCDS
NMD
Overlapping
sORF

E14, MEF, v6-5,
B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1207840

ATA...

ICA...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1207010	ENSMUST00000154683	Rad51-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1052448

123

GTG...

VEA...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

496200

TTG...

LTP...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, B_cell, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

499002

CTG...

LAP...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

MEF, R1E, Spleen_B_cell,
B_cell, E14, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

1211387

AAG...

KSW...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

498661

GTG...

VGG...

GTG

sORF
Alternative
NMD
Upstream

E14, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

495809

GTG...

VAR...

GTG

sORF
Upstream
NMD

3T3, B_cell, MEF,
R1E, E14, Neutrophil,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq	strong	5	sORFs_org_Mouse

733836

CTG...

LRQ...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, v6-5, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1207782

AGG...

RKT...

AGG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1165641

156

GTG...

VKK...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

499868

174

GTG...

VEL...

GTG

InCDS
Overlapping
sORF

B_cell, E14, MEF,
R1E, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

501401

162

CTG...

LDL...

CTG

InCDS
Overlapping
sORF

3T3, B_cell, E14,
MEF, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

1211802

AGG...

REH...

AGG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

496286

114

GTG...

VVI...

GTG

Intronic
sORF
Alternative
Downstream
NMD
Overlapping

E14, MEF, Neutrophil,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1207010	ENSMUST00000154683	Rad51-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1052698	ENSMUST00000143934	Rad51-205	retained_intron	Ribo-seq		5	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

496523

GTG...

VQS...

GTG

Alternative
sORF
Upstream
NMD

3T3, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1207992

ATA...

ILQ...

ATA

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

501914

126

CTG...

LGR...

CTG

InCDS
Overlapping
sORF

3T3, B_cell, R1E,
MEF, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

808485

TTG...

LRL...

TTG

InCDS
Overlapping
sORF
NMD

B_cell, MEF, R1E,
E14, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
492584	ENSMUST00000152327	Rad51-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

966730

ATT...

IDR...

ATT

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44239	ENSMUST00000110828	Rad51-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1162277

ATG...

MSG...

ATG

Intronic
sORF

E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

744245

CTG...

LRD...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1213838

AGG...

RQQ...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1053995

CTG...

LDK...

CTG

Intronic
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

1210691

150

AGG...

RSN...

AGG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

744384

CTG...

LQI...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

811120

CTG...

LGR...

CTG

InCDS
Overlapping
sORF

B_cell, Brain, R1E,
E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
499869	ENSMUST00000028795	Rad51-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
501155	ENSMUST00000151406	Rad51-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1208525

ATA...

INI...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44352	ENSMUST00000141389	Rad51-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1211197

AAG...

KFW...

AAG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
412232	ENSMUST00000140939	Rad51-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1213310

AGG...

RAG...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1207010	ENSMUST00000154683	Rad51-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

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