Transcript 492584

Transcript

ID CARD

MetamORF ID

492584

ENSMUST00000152327

Name

Rad51-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

119112817-119137037

CDS Start-stop positions

119116314-119134405

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:19361

Aliases

AV304093,
ENSMUSG00000027323, MGI:97890, NCBI:19361,
OFF:Rad51, Rad51, Rad51a,
Reca

Chr 2

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
497335	63	GTG ...	VWC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
729288	60	ATG ...	MRE ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
493837	75	TTG ...	LTV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1054603	36	GTG ...	VFF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil
492583	69	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
499036	30	CTG ...	LLL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1053434	117	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil
1053282	57	GTG ...	VEE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
44351	132	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
498770	117	CTG ...	LRK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
48652	174	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
742471	87	ATG ...	MEQ ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
495098	123	CTG ...	LYL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
48706	147	GTG ...	VWP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Neutrophil, Spleen_B_cell, v6-5
812262	96	GTG ...	VEL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, v6-5
811021	84	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, v6-5
497937	66	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1052448	123	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
494858	57	GTG ...	VQI ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
494780	66	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
496200	39	TTG ...	LTP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1165641	156	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
44238	132	CTG ...	LKF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell, v6-5
497810	42	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
496286	114	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
499002	42	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
44791	111	CTG ...	LTE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell, v6-5
499659	60	GTG ...	VKG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
496523	54	GTG ...	VQS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
808485	90	TTG ...	LRL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
498661	72	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
495809	72	GTG ...	VAR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	NMD sORF Upstream	MEF, Neutrophil, Spleen_B_cell, v6-5

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