Transcript 412232

Transcript

ID CARD

MetamORF ID

412232

ENSMUST00000140939

Name

Rad51-203

Strand

Biotype

protein_coding

Start-end positions

119112793-119123846

CDS Start-stop positions

119116314-

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:19361

Aliases

AV304093,
ENSMUSG00000027323, MGI:97890, NCBI:19361,
OFF:Rad51, Rad51, Rad51a,
Reca

Chr 2

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1214504	36	AAG ...	KKV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
1213793	123	GTG ...	VKW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
44791	111	CTG ...	LTE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	BMDC, E14, MEF
1053434	117	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
497810	42	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
498661	72	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
494780	66	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	E14
1207782	66	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
495809	72	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	E14, MEF
1207992	51	ATA ...	ILQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	E14
1210691	150	AGG ...	RSN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
810560	63	TTG ...	LEN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
1211197	75	AAG ...	KFW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
44238	132	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	C2C12, E14

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