Gene NCBI:19046 | MetamORF

Gene

ID CARD

NCBI:19046

Aliases

1200010B19
ENSMUSG00000014956, MGI:104871, NCBI:19046
OFF:Ppp1cb, Ppp1cb

Chromosome

Transcripts

99 ORFs
6 known transcripts
157 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

171311

ENSMUST00000201207

Ppp1cb-202

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
977524	90	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
828603	63	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
902493	57	ATT ...	IGL ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
828525	216	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1559947	195	TTG ...	LAY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1240289	108	AGG ...	RRL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
181676	84	TTG ...	LCI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
901566	90	ATT ...	IMW ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1234675	225	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
66272	51	GTG ...	VKS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
65987	48	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14
185313	66	CTG ...	LFA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1558322	201	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1237327	207	ATC ...	ICL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
566598	39	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
567035	33	TTG ...	LEA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
832748	237	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
905351	63	ATC ...	IFL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14

167116

ENSMUST00000202078

Ppp1cb-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1237646	54	ACG ...	TYL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
62189	36	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
62784	39	TTG ...	LMR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
1575803	93	ACG ...	TWT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
65987	48	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
62692	42	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell

518774

ENSMUST00000201880

Ppp1cb-205

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1020015	105	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
63531	36	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
904391	33	ATT ...	IFC ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	NMD sORF	BMDC, E14
1019010	45	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
1238293	78	AAG ...	KYQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
904620	36	ACG ...	TDM ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	NMD sORF	BMDC, E14
1238711	51	ACG ...	TTV ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	NMD sORF	E14
1796	60	CTG ...	LNS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	NMD sORF	BMDC, Brain, E14, Spleen_B_cell
977481	270	TTG ...	LVT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
2309	102	TTG ...	LKP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	NMD sORF	BMDC, Brain, Spleen_B_cell
61549	45	CTG ...	LPQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, E14
902401	96	ATT ...	ILD ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	NMD sORF	BMDC, E14
177986	84	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	BMDC
902188	60	ATC ...	IHR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
904922	36	ATT ...	ITV ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
1235987	87	AAG ...	KKA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	NMD sORF	E14

171843

ENSMUST00000201600

Ppp1cb-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1236846	78	AGG ...	RRV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1237337	45	ACG ...	TPS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
61927	51	GTG ...	VRT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Spleen_B_cell
522071	57	GTG ...	VGG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
517347	75	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
63821	30	GTG ...	VPT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell
64198	39	TTG ...	LEP ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell
521796	81	CTG ...	LSL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Spleen_B_cell
902621	45	AGG ...	REE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
64208	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell

61550

ENSMUST00000015100

Ppp1cb-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
66284	33	ATG ...	MSS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis
62784	39	TTG ...	LMR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, Testis
1685876	111	ATG ...	MYL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
521796	81	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
177682	87	ATG ...	MWT ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, v6-5
521587	90	GTG ...	VRA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
64451	90	GTG ...	VTY ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil, NSC, Testis, v6-5
63313	45	TTG ...	LNM ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, Testis, v6-5
64208	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil, Testis
64198	39	TTG ...	LEP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil, Testis
61927	51	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Testis
66272	51	GTG ...	VKS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
517347	75	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
568612	30	GTG ...	VFL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC
903788	66	ATA ...	IRM ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
185313	66	CTG ...	LFA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, v6-5
171541	39	ATG ...	MTV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil, NSC
831323	240	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
63905	87	CTG ...	LKQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, NSC, Testis
65306	60	ATG ...	MCK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis
519246	168	CTG ...	LTR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
902418	129	ATT ...	IYF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
830055	75	GTG ...	VAL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
520148	192	CTG ...	LGS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
65531	135	TTG ...	LFI ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, Neutrophil, R1E, Spleen_B_cell, Testis
65987	48	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, Testis
567943	33	GTG ...	VVF ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC
63755	30	GTG ...	VAS ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC, Testis
829145	225	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
62692	42	TTG ...	LLM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
179587	30	ATG ...	MNF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC
177945	93	CTG ...	LDV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, NSC
63446	147	CTG ...	LGA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil, Spleen_B_cell, Testis
522071	57	GTG ...	VGG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
832051	69	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Neutrophil
62189	36	ATG ...	MRK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, Testis
64094	99	GTG ...	VCA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Testis
415028	48	AGG ...	RWW ...	Ribo-seq	AGG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
61989	114	GTG ...	VGA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Testis
63531	36	CTG ...	LKR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
828999	81	CTG ...	LSV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
63821	30	GTG ...	VPT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil, NSC, Testis
831022	30	GTG ...	VEE ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, R1E
518811	132	CTG ...	LLV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
61556	39	ATG ...	MEV ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis, v6-5
828791	51	CTG ...	LGG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Neutrophil
61549	45	CTG ...	LPQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC, Testis
177986	84	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC

1797

ENSMUST00000201360

Ppp1cb-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
832497	66	ATG ...	MSF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
64198	39	TTG ...	LEP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	3T3, B_cell, E14
568612	30	GTG ...	VFL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, v6-5
61549	45	CTG ...	LPQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
567943	33	GTG ...	VVF ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, v6-5
1686840	87	GTG ...	VGH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
171140	174	GTG ...	VQG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, R1E
177945	93	CTG ...	LDV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	3T3, B_cell, MEF, R1E
1796	60	CTG ...	LNS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
977524	90	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1686100	78	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
902418	129	ATT ...	IYF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
1998	75	CTG ...	LSP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, Skin_tumor, v6-5
1685876	111	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1087977	198	CTG ...	LWS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, R1E, v6-5
63821	30	GTG ...	VPT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, MEF, v6-5
185313	66	CTG ...	LFA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E
66272	51	GTG ...	VKS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, v6-5
64094	99	GTG ...	VCA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Brain, Spleen_B_cell
64451	90	GTG ...	VTY ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E
62692	42	TTG ...	LLM ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, Liver, MEF, R1E, v6-5
63531	36	CTG ...	LKR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, MEF, R1E, v6-5
63313	45	TTG ...	LNM ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, R1E
181676	84	TTG ...	LCI ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, v6-5
1664398	66	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
63905	87	CTG ...	LKQ ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
1686804	48	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
177682	87	ATG ...	MWT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E
63755	30	GTG ...	VAS ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
566598	39	TTG ...	LEL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
830930	69	CTG ...	LMS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
177834	135	CTG ...	LLV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
61989	114	GTG ...	VGA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Brain, Spleen_B_cell
62784	39	TTG ...	LMR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
177986	84	CTG ...	LSL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	3T3, Brain, MEF, R1E
171541	39	ATG ...	MTV ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1088247	213	TTG ...	LLC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, R1E, v6-5
62189	36	ATG ...	MRK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, Liver, MEF, R1E, v6-5
2309	102	TTG ...	LKP ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
1663279	36	GTG ...	VNV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF
828603	63	CTG ...	LTS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14, MEF
1311555	132	TTG ...	LVC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
64208	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, MEF, v6-5
828525	216	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell
1685765	69	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
569438	123	TTG ...	LFF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, v6-5
521796	81	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell
179587	30	ATG ...	MNF ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
1661115	153	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
832748	237	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell
61556	39	ATG ...	MEV ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, R1E
65306	60	ATG ...	MCK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
66284	33	ATG ...	MSS ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
65987	48	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
567035	33	TTG ...	LEA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
521587	90	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Spleen_B_cell
1686637	87	ATG ...	MDN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
180283	30	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
61927	51	GTG ...	VRT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	B_cell

3059359

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1685876	111	ATG ...	MYL ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

99 ORFs
6 known transcripts
157 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

977524

AGG...

RKA...

AGG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

828603

CTG...

LTS...

CTG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping

Brain, B_cell, E14,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

902493

ATT...

IGL...

ATT

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse

828525

216

TTG...

LET...

TTG

ncRNA
sORF
InCDS
NMD
Overlapping

Brain, E14, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1237646

ACG...

TYL...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167116	ENSMUST00000202078	Ppp1cb-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1020015

105

CTG...

LNR...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1236846

AGG...

RRV...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1559947

195

TTG...

LAY...

TTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

66284

ATG...

MSS...

ATG

InCDS
Overlapping
sORF
NMD

BMDC, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, Testis,
3T3, B_cell, E14,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse Johnstone2016
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	10	sORFs_org_Mouse

62784

TTG...

LMR...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, Liver, MEF,
Neutrophil, NSC, Testis,
Spleen_B_cell, 3T3, E14,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
167116	ENSMUST00000202078	Ppp1cb-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

832497

ATG...

MSF...

ATG

InCDS
NMD
Overlapping
sORF

B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

64198

TTG...

LEP...

TTG

Alternative
NMD
sORF
Upstream
Intronic

3T3, B_cell, E14,
Neutrophil, Testis, BMDC,
Brain, MEF, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	strong	6	sORFs_org_Mouse

63531

CTG...

LKR...

CTG

NMD
sORF
InCDS
Overlapping

BMDC, 3T3, B_cell,
MEF, R1E, v6-5,
Brain, Neutrophil, NSC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

1685876

111

ATG...

MYL...

ATG

Downstream
sORF
NMD

Glioma, Liver, MEF,
MESC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
3059359	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

568612

GTG...

VFL...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, E14, MEF,
v6-5, Brain, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

521796

CTG...

LSL...

CTG

Alternative
sORF
Upstream
Intronic
NMD

Neutrophil, BMDC, E14,
Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

177682

ATG...

MWT...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, Glioma, Liver,
MEF, MESC, Neutrophil,
NSC, v6-5, 3T3,
B_cell, E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse Johnstone2016
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse

521587

GTG...

VRA...

GTG

Alternative
sORF
Upstream
NMD

Neutrophil, B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

61549

CTG...

LPQ...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, MEF, v6-5,
Brain, E14, Neutrophil,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

62189

ATG...

MRK...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, Spleen_B_cell, 3T3,
E14, Liver, MEF,
R1E, v6-5, Neutrophil,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167116	ENSMUST00000202078	Ppp1cb-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1240289

108

AGG...

RRL...

AGG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

567943

GTG...

VVF...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, E14, MEF,
v6-5, Brain, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	strong	6	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

904391

ATT...

IFC...

ATT

NMD
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

64451

GTG...

VTY...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

BMDC, Brain, Neutrophil,
NSC, Testis, v6-5,
3T3, B_cell, E14,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	7	sORFs_org_Mouse

63313

TTG...

LNM...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

Liver, MEF, Neutrophil,
NSC, Testis, v6-5,
3T3, B_cell, E14,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse

64208

CTG...

LVP...

CTG

Alternative
Overlapping
sORF
Upstream
NMD
Intronic

Neutrophil, Testis, 3T3,
B_cell, MEF, v6-5,
BMDC, Brain, E14,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	strong	5	sORFs_org_Mouse
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	strong	6	sORFs_org_Mouse

181676

TTG...

LCI...

TTG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping

Brain, 3T3, B_cell,
E14, Liver, MEF,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		10	sORFs_org_Mouse

1686840

GTG...

VGH...

GTG

Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

171140

174

GTG...

VQG...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, E14, MEF,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

177945

CTG...

LDV...

CTG

Downstream
NMD
Overlapping
sORF

3T3, B_cell, MEF,
R1E, Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

61927

GTG...

VRT...

GTG

sORF
Upstream
Intronic
NMD

Neutrophil, Testis, E14,
R1E, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

66272

GTG...

VKS...

GTG

Alternative
InCDS
Overlapping
sORF
NMD
ncRNA

Brain, MEF, Neutrophil,
NSC, Testis, 3T3,
B_cell, E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	5	sORFs_org_Mouse
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

517347

CTG...

LLG...

CTG

Alternative
sORF
Upstream
Intronic

Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1019010

TTG...

LSS...

TTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1796

CTG...

LNS...

CTG

Alternative
CDS
NMD
sORF

3T3, B_cell, Brain,
E14, Liver, MEF,
R1E, Skin_tumor, v6-5,
BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	11	sORFs_org_Mouse
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

903788

ATA...

IRM...

ATA

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1238293

AAG...

KYQ...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

901566

ATT...

IMW...

ATT

ncRNA
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse

185313

CTG...

LFA...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
ncRNA

Brain, MEF, Neutrophil,
NSC, v6-5, 3T3,
B_cell, E14, Liver,
R1E, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

171541

ATG...

MTV...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

BMDC, Brain, Neutrophil,
NSC, 3T3, E14,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	7	sORFs_org_Mouse

1686100

TTG...

LSA...

TTG

Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1575803

ACG...

TWT...

ACG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167116	ENSMUST00000202078	Ppp1cb-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

902418

129

ATT...

IYF...

ATT

Alternative
NMD
sORF
Upstream

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

831323

240

TTG...

LRS...

TTG

Alternative
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1998

CTG...

LSP...

CTG

InCDS
NMD
Overlapping
sORF

3T3, B_cell, E14,
Liver, MEF, R1E,
Skin_tumor, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		11	sORFs_org_Mouse

904620

ACG...

TDM...

ACG

NMD
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

1087977

198

CTG...

LWS...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

E14, Liver, MEF,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

1238711

ACG...

TTV...

ACG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1234675

225

AAG...

KQS...

AAG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

63821

GTG...

VPT...

GTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

3T3, B_cell, MEF,
v6-5, BMDC, Brain,
R1E, Spleen_B_cell, Neutrophil,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	5	sORFs_org_Mouse
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

65987

CTG...

LLL...

CTG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

Spleen_B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Testis,
3T3, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167116	ENSMUST00000202078	Ppp1cb-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

64094

GTG...

VCA...

GTG

NMD
sORF
Upstream

B_cell, Brain, Spleen_B_cell,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

977481

270

TTG...

LVT...

TTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

62692

TTG...

LLM...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, E14, Liver,
MEF, R1E, v6-5,
Brain, Neutrophil, NSC,
Testis, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
167116	ENSMUST00000202078	Ppp1cb-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1237337

ACG...

TPS...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

2309

102

TTG...

LKP...

TTG

NMD
sORF
Alternative
CDS

BMDC, Brain, Spleen_B_cell,
3T3, B_cell, E14,
Liver, MEF, R1E,
Skin_tumor, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	11	sORFs_org_Mouse

522071

GTG...

VGG...

GTG

Intronic
sORF
Alternative
Upstream

Spleen_B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

63905

CTG...

LKQ...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

Neutrophil, NSC, Testis,
3T3, B_cell, E14,
MEF, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	weak	7	sORFs_org_Mouse

65306

ATG...

MCK...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

BMDC, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, Testis,
3T3, E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse Johnstone2016
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	7	sORFs_org_Mouse

1664398

GTG...

VKT...

GTG

Alternative
Downstream
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1686804

CTG...

LVS...

CTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

519246

168

CTG...

LTR...

CTG

Alternative
sORF
Upstream

B_cell, Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

63755

GTG...

VAS...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, MEF, v6-5,
Brain, Neutrophil, NSC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

566598

TTG...

LEL...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

3T3, B_cell, E14,
Liver, MEF, R1E,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		10	sORFs_org_Mouse
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

830055

GTG...

VAL...

GTG

sORF
Upstream

B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

520148

192

CTG...

LGS...

CTG

Alternative
sORF
Upstream

B_cell, E14, Neutrophil,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

65531

135

TTG...

LFI...

TTG

sORF
Upstream

B_cell, BMDC, E14,
Neutrophil, R1E, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse

1558322

201

TTG...

LLL...

TTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

902401

ATT...

ILD...

ATT

NMD
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

830930

CTG...

LMS...

CTG

InCDS
NMD
Overlapping
sORF

B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

829145

225

GTG...

VPR...

GTG

Alternative
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

177834

135

CTG...

LLV...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, E14, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

61989

114

GTG...

VGA...

GTG

NMD
sORF
Upstream

B_cell, Brain, Spleen_B_cell,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

179587

ATG...

MNF...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, Glioma, Liver,
MEF, MESC, NSC,
3T3, E14, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	7	sORFs_org_Mouse

177986

CTG...

LSL...

CTG

Downstream
NMD
Overlapping
sORF

3T3, Brain, MEF,
R1E, BMDC, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1237327

207

ATC...

ICL...

ATC

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

63446

147

CTG...

LGA...

CTG

sORF
Upstream

B_cell, Neutrophil, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

832051

CTG...

LPS...

CTG

sORF
Upstream

B_cell, E14, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1088247

213

TTG...

LLC...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

E14, Liver, MEF,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

1663279

GTG...

VNV...

GTG

Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1311555

132

TTG...

LVC...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

902621

AGG...

REE...

AGG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171843	ENSMUST00000201600	Ppp1cb-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1685765

CTG...

LNI...

CTG

Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

415028

AGG...

RWW...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC, C2C12, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

569438

123

TTG...

LFF...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, B_cell, E14,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

828999

CTG...

LSV...

CTG

sORF
Upstream

B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

902188

ATC...

IHR...

ATC

NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1661115

153

GTG...

VLA...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

904922

ATT...

ITV...

ATT

NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

831022

GTG...

VEE...

GTG

sORF
Upstream

B_cell, E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

832748

237

GTG...

VDR...

GTG

InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

567035

TTG...

LEA...

TTG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping

BMDC, Brain, 3T3,
B_cell, E14, Liver,
MEF, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		9	sORFs_org_Mouse

61556

ATG...

MEV...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, B_cell, E14,
R1E, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	8	sORFs_org_Mouse Johnstone2016

518811

132

CTG...

LLV...

CTG

Alternative
sORF
Upstream

B_cell, E14, Neutrophil,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

1235987

AAG...

KKA...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518774	ENSMUST00000201880	Ppp1cb-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

828791

CTG...

LGG...

CTG

sORF
Upstream

B_cell, E14, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61550	ENSMUST00000015100	Ppp1cb-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

1686637

ATG...

MDN...

ATG

InCDS
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

905351

ATC...

IFL...

ATC

ncRNA
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
171311	ENSMUST00000201207	Ppp1cb-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

180283

TTG...

LGF...

TTG

Alternative
Downstream
NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1797	ENSMUST00000201360	Ppp1cb-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

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