Transcript 61550 | MetamORF

Transcript

ID CARD

MetamORF ID

61550

ENSMUST00000015100

Name

Ppp1cb-201

Strand

Biotype

protein_coding

Start-end positions

32458843-32495523

CDS Start-stop positions

32459356-32491058

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:19046

Aliases

1200010B19,
ENSMUSG00000014956, MGI:104871, NCBI:19046,
OFF:Ppp1cb, Ppp1cb

Chr 5

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
66284	33	ATG ...	MSS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis
62784	39	TTG ...	LMR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, Testis
1685876	111	ATG ...	MYL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
521796	81	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
177682	87	ATG ...	MWT ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, v6-5
521587	90	GTG ...	VRA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
64451	90	GTG ...	VTY ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil, NSC, Testis, v6-5
63313	45	TTG ...	LNM ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, Testis, v6-5
64208	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil, Testis
64198	39	TTG ...	LEP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil, Testis
61927	51	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Testis
66272	51	GTG ...	VKS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
517347	75	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
568612	30	GTG ...	VFL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC
903788	66	ATA ...	IRM ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
185313	66	CTG ...	LFA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, v6-5
171541	39	ATG ...	MTV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil, NSC
831323	240	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
63905	87	CTG ...	LKQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, NSC, Testis
65306	60	ATG ...	MCK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis
519246	168	CTG ...	LTR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
902418	129	ATT ...	IYF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
830055	75	GTG ...	VAL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
520148	192	CTG ...	LGS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
65531	135	TTG ...	LFI ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, Neutrophil, R1E, Spleen_B_cell, Testis
65987	48	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, Testis
567943	33	GTG ...	VVF ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC
63755	30	GTG ...	VAS ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC, Testis
829145	225	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
62692	42	TTG ...	LLM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
179587	30	ATG ...	MNF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC
177945	93	CTG ...	LDV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, NSC
63446	147	CTG ...	LGA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil, Spleen_B_cell, Testis
522071	57	GTG ...	VGG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
832051	69	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Neutrophil
62189	36	ATG ...	MRK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, Testis
64094	99	GTG ...	VCA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Testis
415028	48	AGG ...	RWW ...	Ribo-seq	AGG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
61989	114	GTG ...	VGA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Testis
63531	36	CTG ...	LKR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
828999	81	CTG ...	LSV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
63821	30	GTG ...	VPT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil, NSC, Testis
831022	30	GTG ...	VEE ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, R1E
518811	132	CTG ...	LLV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
61556	39	ATG ...	MEV ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis, v6-5
828791	51	CTG ...	LGG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Neutrophil
61549	45	CTG ...	LPQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC, Testis
177986	84	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC

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