Transcript 1797 | MetamORF

Transcript

ID CARD

MetamORF ID

1797

ENSMUST00000201360

Name

Ppp1cb-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

32459152-32517433

CDS Start-stop positions

32459356-32491058

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:19046

Aliases

1200010B19,
ENSMUSG00000014956, MGI:104871, NCBI:19046,
OFF:Ppp1cb, Ppp1cb

Chr 5

ORFs

59 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
832497	66	ATG ...	MSF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
64198	39	TTG ...	LEP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	3T3, B_cell, E14
568612	30	GTG ...	VFL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, v6-5
61549	45	CTG ...	LPQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
567943	33	GTG ...	VVF ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, v6-5
1686840	87	GTG ...	VGH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
171140	174	GTG ...	VQG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, R1E
177945	93	CTG ...	LDV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	3T3, B_cell, MEF, R1E
1796	60	CTG ...	LNS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
977524	90	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1686100	78	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
902418	129	ATT ...	IYF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
1998	75	CTG ...	LSP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, Skin_tumor, v6-5
1685876	111	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1087977	198	CTG ...	LWS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, R1E, v6-5
63821	30	GTG ...	VPT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, MEF, v6-5
185313	66	CTG ...	LFA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E
66272	51	GTG ...	VKS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, v6-5
64094	99	GTG ...	VCA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Brain, Spleen_B_cell
64451	90	GTG ...	VTY ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E
62692	42	TTG ...	LLM ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, Liver, MEF, R1E, v6-5
63531	36	CTG ...	LKR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, MEF, R1E, v6-5
63313	45	TTG ...	LNM ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, R1E
181676	84	TTG ...	LCI ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, v6-5
1664398	66	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
63905	87	CTG ...	LKQ ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
1686804	48	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
177682	87	ATG ...	MWT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E
63755	30	GTG ...	VAS ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
566598	39	TTG ...	LEL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
830930	69	CTG ...	LMS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
177834	135	CTG ...	LLV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
61989	114	GTG ...	VGA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Brain, Spleen_B_cell
62784	39	TTG ...	LMR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
177986	84	CTG ...	LSL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	3T3, Brain, MEF, R1E
171541	39	ATG ...	MTV ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1088247	213	TTG ...	LLC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, R1E, v6-5
62189	36	ATG ...	MRK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, Liver, MEF, R1E, v6-5
2309	102	TTG ...	LKP ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
1663279	36	GTG ...	VNV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF
828603	63	CTG ...	LTS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, E14, MEF
1311555	132	TTG ...	LVC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
64208	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, MEF, v6-5
828525	216	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell
1685765	69	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
569438	123	TTG ...	LFF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, v6-5
521796	81	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell
179587	30	ATG ...	MNF ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
1661115	153	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
832748	237	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell
61556	39	ATG ...	MEV ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, R1E
65306	60	ATG ...	MCK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
66284	33	ATG ...	MSS ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
65987	48	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
567035	33	TTG ...	LEA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
521587	90	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Spleen_B_cell
1686637	87	ATG ...	MDN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
180283	30	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
61927	51	GTG ...	VRT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	B_cell

Export data