Gene NCBI:16784 | MetamORF

Gene

ID CARD

NCBI:16784

Aliases

CD107b
ENSMUSG00000016534, Lamp II, Lamp-2
Lamp-2a, Lamp-2b, Lamp-2c
Lamp2, LGP-B, Mac3
MGI:96748, NCBI:16784, OFF:Lamp2

Chromosome

Transcripts

62 ORFs
5 known transcripts
153 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

764926

ENSMUST00000136817

Lamp2-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
275450	30	GTG ...	VGM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
1574015	228	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
766312	48	CTG ...	LQA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
280561	57	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
279135	45	TTG ...	LPL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
765037	126	TTG ...	LDV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
7020	138	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
281513	30	GTG ...	VIA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
281103	42	CTG ...	LSA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
284294	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
278988	162	CTG ...	LWH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
7438	66	TTG ...	LET ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
275722	60	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
276514	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
279901	45	ATG ...	MAI ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
1573310	258	GTG ...	VCE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
766354	84	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
283763	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
279887	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
7312	69	TTG ...	LQY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
282694	186	GTG ...	VKK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

275451

ENSMUST00000061755

Lamp2-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89339	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, E14, Liver
7020	138	CTG ...	LPR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
284220	60	CTG ...	LSF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver
7438	66	TTG ...	LET ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
279887	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
88883	57	TTG ...	LSV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver
631597	33	GTG ...	VQQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver
282694	186	GTG ...	VKK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
88911	66	GTG ...	VVA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Liver
275450	30	GTG ...	VGM ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
1277505	78	ATT ...	IVG ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
279135	45	TTG ...	LPL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
282234	54	CTG ...	LRI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1278523	66	ATA ...	ICA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
281513	30	GTG ...	VIA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
277436	165	ATG ...	MTP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Brain, Liver
283763	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
284601	144	CTG ...	LGA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, E14, Liver
443131	63	CTG ...	LGC ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
89107	33	CTG ...	LRD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, Liver
286746	132	ATG ...	MAQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver
1278696	57	ATC ...	ILR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277434	99	GTG ...	VPG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Liver
89592	120	GTG ...	VPR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver
279901	45	ATG ...	MAI ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1280846	45	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1281399	78	AAG ...	KEF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277873	69	GTG ...	VLS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Liver
276621	87	ATG ...	MPL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
88522	108	GTG ...	VVS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver
89030	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, E14, Liver, R1E
927683	39	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
284294	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
286001	153	ATG ...	MST ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
282794	48	TTG ...	LGY ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver
277487	48	TTG ...	LGC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
286336	198	ATG ...	MNK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver
1278592	93	AGG ...	RGF ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
7312	69	TTG ...	LQY ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
441455	126	CTG ...	LKR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Liver
281103	42	CTG ...	LSA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
278988	162	CTG ...	LWH ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1279489	54	AAG ...	KSR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
276514	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
281273	153	TTG ...	LRC ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, Liver
275808	66	CTG ...	LLK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1278385	39	ATT ...	IRW ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
275722	60	CTG ...	LTR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
277430	39	CTG ...	LCL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
280561	57	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver

276945

ENSMUST00000144663

Lamp2-205

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
88522	108	GTG ...	VVS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
89339	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
89592	120	GTG ...	VPR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
277873	69	GTG ...	VLS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
88911	66	GTG ...	VVA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
89030	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
418179	33	CTG ...	LFL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, C2C12, MEF
284601	144	CTG ...	LGA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
89107	33	CTG ...	LRD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
927948	90	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
277434	99	GTG ...	VPG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
88883	57	TTG ...	LSV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF

88523

ENSMUST00000016678

Lamp2-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
926960	54	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
7438	66	TTG ...	LET ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
89030	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
443131	63	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
88522	108	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
284220	60	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
926546	90	ATT ...	ILP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
927657	66	ATT ...	IWI ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
276621	87	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
284294	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
275808	66	CTG ...	LLK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
7020	138	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
631597	33	GTG ...	VQQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
89339	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Testis
276514	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
928451	141	ATT ...	IWL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
286001	153	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
286746	132	ATG ...	MAQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
927332	180	AAG ...	KTK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
88911	66	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	Testis
286336	198	ATG ...	MNK ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC
89592	120	GTG ...	VPR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
89107	33	CTG ...	LRD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
927683	39	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
279887	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
281103	42	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
283763	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
277436	165	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Overlapping sORF Upstream	Glioma, Liver, MEF, MESC
282794	48	TTG ...	LGY ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
88883	57	TTG ...	LSV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis

7021

ENSMUST00000074913

Lamp2-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284601	144	CTG ...	LGA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell
275808	66	CTG ...	LLK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
278988	162	CTG ...	LWH ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
281513	30	GTG ...	VIA ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC
284294	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
89592	120	GTG ...	VPR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
7020	138	CTG ...	LPR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, v6-5
276514	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
443131	63	CTG ...	LGC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
275450	30	GTG ...	VGM ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
281273	153	TTG ...	LRC ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
279135	45	TTG ...	LPL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
631597	33	GTG ...	VQQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
275722	60	CTG ...	LTR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
277434	99	GTG ...	VPG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
277487	48	TTG ...	LGC ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
286336	198	ATG ...	MNK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
88522	108	GTG ...	VVS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
276621	87	ATG ...	MPL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
88883	57	TTG ...	LSV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
282794	48	TTG ...	LGY ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
277436	165	ATG ...	MTP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Spleen_B_cell
284220	60	CTG ...	LSF ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Neutrophil, Spleen_B_cell, v6-5
88911	66	GTG ...	VVA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell
280561	57	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell
7438	66	TTG ...	LET ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Neutrophil, NSC, Skin_tumor, v6-5
441455	126	CTG ...	LKR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Spleen_B_cell
89107	33	CTG ...	LRD ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
286746	132	ATG ...	MAQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
286001	153	ATG ...	MST ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
282234	54	CTG ...	LRI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
279887	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Neutrophil, v6-5
89030	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
277873	69	GTG ...	VLS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
282694	186	GTG ...	VKK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC
283763	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
281103	42	CTG ...	LSA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
89339	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
7312	69	TTG ...	LQY ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
277430	39	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC

3078248

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
286001	153	ATG ...	MST ...	Predicted	ATG		1	Samandi2017	sORF
277436	165	ATG ...	MTP ...	Predicted	ATG		1	Samandi2017	sORF
286336	198	ATG ...	MNK ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

62 ORFs
5 known transcripts
153 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

275450

GTG...

VGM...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, 3T3, Brain,
Liver, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

89339

CTG...

LRG...

CTG

Overlapping
sORF
Upstream
ncRNA
Alternative

3T3, BMDC, E14,
Liver, B_cell, Brain,
MEF, Testis, C2C12,
Neutrophil, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

7020

138

CTG...

LPR...

CTG

InCDS
Overlapping
sORF
Alternative
Intronic

3T3, BMDC, Brain,
Liver, E14, MEF,
Neutrophil, NSC, Skin_tumor,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

88522

108

GTG...

VVS...

GTG

ncRNA
sORF
Alternative
Overlapping
Upstream

B_cell, Brain, MEF,
Testis, Liver, Neutrophil,
Spleen_B_cell, v6-5, 3T3,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

1574015

228

GTG...

VAP...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

284220

CTG...

LSF...

CTG

Alternative
InCDS
Overlapping
sORF

BMDC, Brain, Liver,
3T3, MEF, Neutrophil,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

7438

TTG...

LET...

TTG

InCDS
Overlapping
sORF
Alternative
Intronic

3T3, BMDC, Brain,
Liver, MEF, B_cell,
Neutrophil, NSC, Skin_tumor,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

766312

CTG...

LQA...

CTG

Intronic
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

926960

ATT...

ILQ...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

279887

ATG...

MEA...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Brain,
E14, Liver, Neutrophil,
v6-5, Glioma, MEF,
MESC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	strong	1	Johnstone2016
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

284601

144

CTG...

LGA...

CTG

Alternative
Overlapping
sORF
Upstream
ncRNA

Liver, MEF, Neutrophil,
Spleen_B_cell, 3T3, BMDC,
E14, B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse

275808

CTG...

LLK...

CTG

Alternative
InCDS
Overlapping
sORF

Liver, MEF, Neutrophil,
Spleen_B_cell, v6-5, 3T3,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

278988

162

CTG...

LWH...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
Brain, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

280561

CTG...

LPQ...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

88883

TTG...

LSV...

TTG

Overlapping
sORF
Upstream
Alternative
ncRNA

3T3, BMDC, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5, B_cell, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

281513

GTG...

VIA...

GTG

InCDS
Overlapping
sORF
Alternative
Intronic

MEF, Neutrophil, NSC,
3T3, BMDC, Brain,
Liver, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

631597

GTG...

VQQ...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Liver,
MEF, NSC, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

282694

186

GTG...

VKK...

GTG

InCDS
Overlapping
sORF
Alternative
Intronic

3T3, BMDC, Brain,
Liver, E14, MEF,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

284294

ATG...

MSS...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Liver, v6-5, Glioma,
MEF, MESC, Brain,
3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

88911

GTG...

VVA...

GTG

Alternative
Overlapping
sORF
Upstream
ncRNA

3T3, BMDC, Liver,
B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	4	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1277505

ATT...

IVG...

ATT

Alternative
Overlapping
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

89592

120

GTG...

VPR...

GTG

Alternative
Overlapping
sORF
Upstream
ncRNA

Liver, MEF, Neutrophil,
Spleen_B_cell, v6-5, B_cell,
Brain, 3T3, BMDC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	weak	3	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

279135

TTG...

LPL...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Brain,
Liver, B_cell, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse

282234

CTG...

LRI...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
Liver, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

276514

ATG...

MGD...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Glioma, MESC, B_cell,
BMDC, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	strong	1	Johnstone2016
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

765037

126

TTG...

LDV...

TTG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

89030

TTG...

LEL...

TTG

Alternative
Overlapping
sORF
Upstream
ncRNA

MEF, Testis, B_cell,
Brain, 3T3, BMDC,
E14, Liver, R1E,
Neutrophil, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

1278523

ATA...

ICA...

ATA

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

443131

CTG...

LGC...

CTG

Alternative
InCDS
Overlapping
sORF

Liver, MEF, NSC,
Spleen_B_cell, v6-5, Brain,
3T3, BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

281273

153

TTG...

LRC...

TTG

Alternative
Overlapping
sORF
Upstream

B_cell, Liver, MEF,
Neutrophil, Spleen_B_cell, 3T3,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

277436

165

ATG...

MTP...

ATG

Overlapping
sORF
Upstream
Alternative

3T3, BMDC, Brain,
Liver, B_cell, MEF,
Spleen_B_cell, Glioma,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
3078248	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016

283763

ATG...

MTS...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5,
Glioma, MESC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

275722

CTG...

LTR...

CTG

InCDS
Overlapping
sORF
Intronic
Alternative

Liver, MEF, Neutrophil,
Spleen_B_cell, v6-5, B_cell,
3T3, BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

277434

GTG...

VPG...

GTG

sORF
Upstream
Alternative
ncRNA

Liver, MEF, Neutrophil,
Spleen_B_cell, v6-5, 3T3,
BMDC, B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

926546

ATT...

ILP...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

277487

TTG...

LGC...

TTG

Alternative
InCDS
Overlapping
sORF

Liver, MEF, NSC,
Spleen_B_cell, v6-5, 3T3,
BMDC, Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

89107

CTG...

LRD...

CTG

Overlapping
sORF
Upstream
ncRNA
Alternative

BMDC, Brain, Liver,
B_cell, MEF, Neutrophil,
Spleen_B_cell, v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

286336

198

ATG...

MNK...

ATG

Alternative
InCDS
Overlapping
sORF

Liver, MEF, Neutrophil,
NSC, BMDC, Brain,
3T3, Glioma, MESC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq		4	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
3078248	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

286746

132

ATG...

MAQ...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Liver,
Brain, B_cell, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq		8	sORFs_org_Mouse

277873

GTG...

VLS...

GTG

ncRNA
sORF
Alternative
Upstream

B_cell, Brain, MEF,
3T3, BMDC, E14,
Liver, Neutrophil, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq	weak	3	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

927657

ATT...

IWI...

ATT

InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

276621

ATG...

MPL...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, B_cell, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5, 3T3,
Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

1278696

ATC...

ILR...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

418179

CTG...

LFL...

CTG

ncRNA
sORF

BMDC, Brain, C2C12,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

282794

TTG...

LGY...

TTG

Alternative
InCDS
Overlapping
sORF

E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5,
BMDC, Brain, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

279901

ATG...

MAI...

ATG

InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Brain,
Liver, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

286001

153

ATG...

MST...

ATG

sORF
Alternative
InCDS
Overlapping

BMDC, Brain,
Glioma, Liver, MEF,
MESC, 3T3, B_cell,
Neutrophil, NSC, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3078248	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse Johnstone2016
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq		8	sORFs_org_Mouse

281103

CTG...

LSA...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, Brain, 3T3,
BMDC, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1280846

ATT...

ILQ...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1281399

AAG...

KEF...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

928451

141

ATT...

IWL...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

441455

126

CTG...

LKR...

CTG

sORF
Upstream
Alternative

B_cell, MEF, Spleen_B_cell,
3T3, BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

927948

AGG...

RRK...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
276945	ENSMUST00000144663	Lamp2-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

927332

180

AAG...

KTK...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

927683

AGG...

RRK...

AGG

InCDS
Overlapping
sORF
Alternative

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
88523	ENSMUST00000016678	Lamp2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1278592

AGG...

RGF...

AGG

Alternative
Overlapping
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

7312

TTG...

LQY...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Brain,
Liver, B_cell, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse

1573310

258

GTG...

VCE...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

766354

CTG...

LTP...

CTG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
764926	ENSMUST00000136817	Lamp2-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1279489

AAG...

KSR...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1278385

ATT...

IRW...

ATT

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

277430

CTG...

LCL...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
Liver, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
275451	ENSMUST00000061755	Lamp2-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
7021	ENSMUST00000074913	Lamp2-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

Export data