Transcript 275451

Transcript

ID CARD

MetamORF ID

275451

ENSMUST00000061755

Name

Lamp2-202

Strand

Biotype

protein_coding

Start-end positions

38419507-38456454

CDS Start-stop positions

38421712-38456303

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:16784

Aliases

CD107b,
ENSMUSG00000016534, Lamp II, Lamp-2,
Lamp-2a, Lamp-2b, Lamp-2c,
Lamp2, LGP-B, Mac3,
MGI:96748, NCBI:16784, OFF:Lamp2

Chr X

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89339	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, E14, Liver
7020	138	CTG ...	LPR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
284220	60	CTG ...	LSF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver
7438	66	TTG ...	LET ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
279887	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
88883	57	TTG ...	LSV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver
631597	33	GTG ...	VQQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver
282694	186	GTG ...	VKK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
88911	66	GTG ...	VVA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Liver
275450	30	GTG ...	VGM ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
1277505	78	ATT ...	IVG ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
279135	45	TTG ...	LPL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
282234	54	CTG ...	LRI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1278523	66	ATA ...	ICA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
281513	30	GTG ...	VIA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
277436	165	ATG ...	MTP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Brain, Liver
283763	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
284601	144	CTG ...	LGA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, E14, Liver
443131	63	CTG ...	LGC ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
89107	33	CTG ...	LRD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, Liver
286746	132	ATG ...	MAQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver
1278696	57	ATC ...	ILR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277434	99	GTG ...	VPG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Liver
89592	120	GTG ...	VPR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver
279901	45	ATG ...	MAI ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1280846	45	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1281399	78	AAG ...	KEF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277873	69	GTG ...	VLS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Liver
276621	87	ATG ...	MPL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
88522	108	GTG ...	VVS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver
89030	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, E14, Liver, R1E
927683	39	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
284294	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
286001	153	ATG ...	MST ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
282794	48	TTG ...	LGY ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver
277487	48	TTG ...	LGC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
286336	198	ATG ...	MNK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver
1278592	93	AGG ...	RGF ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
7312	69	TTG ...	LQY ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
441455	126	CTG ...	LKR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Liver
281103	42	CTG ...	LSA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
278988	162	CTG ...	LWH ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1279489	54	AAG ...	KSR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
276514	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
281273	153	TTG ...	LRC ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, Liver
275808	66	CTG ...	LLK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1278385	39	ATT ...	IRW ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
275722	60	CTG ...	LTR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
277430	39	CTG ...	LCL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
280561	57	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver

Export data