Transcript 7021 | MetamORF

Transcript

ID CARD

MetamORF ID

7021

ENSMUST00000074913

Name

Lamp2-203

Strand

Biotype

protein_coding

Start-end positions

38401357-38456454

CDS Start-stop positions

38402139-38456303

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:16784

Aliases

CD107b,
ENSMUSG00000016534, Lamp II, Lamp-2,
Lamp-2a, Lamp-2b, Lamp-2c,
Lamp2, LGP-B, Mac3,
MGI:96748, NCBI:16784, OFF:Lamp2

Chr X

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284601	144	CTG ...	LGA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell
275808	66	CTG ...	LLK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
278988	162	CTG ...	LWH ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
281513	30	GTG ...	VIA ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC
284294	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
89592	120	GTG ...	VPR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
7020	138	CTG ...	LPR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, v6-5
276514	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
443131	63	CTG ...	LGC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
275450	30	GTG ...	VGM ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
281273	153	TTG ...	LRC ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
279135	45	TTG ...	LPL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
631597	33	GTG ...	VQQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
275722	60	CTG ...	LTR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
277434	99	GTG ...	VPG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
277487	48	TTG ...	LGC ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
286336	198	ATG ...	MNK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
88522	108	GTG ...	VVS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
276621	87	ATG ...	MPL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
88883	57	TTG ...	LSV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
282794	48	TTG ...	LGY ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
277436	165	ATG ...	MTP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Spleen_B_cell
284220	60	CTG ...	LSF ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Neutrophil, Spleen_B_cell, v6-5
88911	66	GTG ...	VVA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell
280561	57	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell
7438	66	TTG ...	LET ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Neutrophil, NSC, Skin_tumor, v6-5
441455	126	CTG ...	LKR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Spleen_B_cell
89107	33	CTG ...	LRD ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
286746	132	ATG ...	MAQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
286001	153	ATG ...	MST ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
282234	54	CTG ...	LRI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
279887	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Neutrophil, v6-5
89030	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
277873	69	GTG ...	VLS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
282694	186	GTG ...	VKK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC
283763	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
281103	42	CTG ...	LSA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
89339	78	CTG ...	LRG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
7312	69	TTG ...	LQY ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
277430	39	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC

Export data