Gene NCBI:12462 | MetamORF

Gene

ID CARD

NCBI:12462

Aliases

AL024092
Cct3, Cctg, ENSMUSG00000001416
MGI:104708, NCBI:12462, OFF:Cct3
Tcp1-rs3, TriC-P5

Chromosome

Transcripts

74 ORFs
10 known transcripts
182 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

52609

ENSMUST00000001452

Cct3-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
132026	42	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
139238	69	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
893517	60	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
895601	153	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
128124	42	ATG ...	MAE ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
135337	60	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53256	90	ATG ...	MST ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
141106	81	TTG ...	LHW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
507791	51	ATG ...	MPF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell, v6-5
893176	60	AAG ...	KTQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
140357	30	CTG ...	LWG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC
140891	45	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53587	138	ATG ...	MML ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
136234	51	TTG ...	LKR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
129080	33	CTG ...	LES ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, MEF, Neutrophil
895760	132	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
507934	60	ATG ...	MMA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell
53223	132	TTG ...	LVQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
138323	51	GTG ...	VNL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
54986	72	ATG ...	MSQ ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
55109	144	TTG ...	LCY ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Testis, v6-5
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
506347	105	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, v6-5
818453	111	CTG ...	LQF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
893703	39	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
507693	57	ATG ...	MAM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Spleen_B_cell, v6-5
536396	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53262	135	ATG ...	MLV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

135774

ENSMUST00000164783

Cct3-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
506347	105	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
136472	129	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
132109	33	TTG ...	LKT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
131914	42	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1552282	90	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
141106	81	TTG ...	LHW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1552402	90	GTG ...	VSW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
139983	57	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
135773	42	TTG ...	LQT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
132026	42	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
817047	54	TTG ...	LVY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
1551500	87	GTG ...	VIS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
129080	33	CTG ...	LES ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1553036	57	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

140892

ENSMUST00000167718

Cct3-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53256	90	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
139983	57	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
53262	135	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
53223	132	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1728963	42	CTG ...	LYP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
132109	33	TTG ...	LKT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1730514	153	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1553036	57	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
140357	30	CTG ...	LWG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
140891	45	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Spleen_B_cell
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
132026	42	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
134766	129	GTG ...	VNG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
139238	69	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
141106	81	TTG ...	LHW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
1728375	102	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
131914	42	TTG ...	LQR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
138323	51	GTG ...	VNL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
506347	105	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
136472	129	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
129080	33	CTG ...	LES ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
1728525	159	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
53587	138	ATG ...	MML ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF

542803

ENSMUST00000168062

Cct3-208

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54986	72	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1683808	87	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
138323	51	GTG ...	VNL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
507934	60	ATG ...	MMA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
140357	30	CTG ...	LWG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1683742	93	GTG ...	VNL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53587	138	ATG ...	MML ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
135773	42	TTG ...	LQT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53256	90	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
507791	51	ATG ...	MPF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
53223	132	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
55109	144	TTG ...	LCY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
140891	45	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
507693	57	ATG ...	MAM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
53262	135	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

819050

ENSMUST00000193666

Cct3-210

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

506347

105

CTG ...

LLF ...

Ribo-seq

CTG

weak

sORFs_org_Mouse

B_cell, MEF

129080

CTG ...

LES ...

Ribo-seq

CTG

strong

sORFs_org_Mouse

BMDC

818454

ENSMUST00000168971

Cct3-209

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
865319	87	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	MEF, R1E
818475	90	TTG ...	LMT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, MEF, R1E
866494	36	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	R1E
818453	111	CTG ...	LQF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	B_cell, MEF, R1E
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	R1E
865546	57	GTG ...	VMT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	R1E
866626	75	CTG ...	LAT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	R1E
866590	33	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	R1E
864478	54	ATG ...	MTR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	R1E
865511	81	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	R1E

542953

ENSMUST00000164166

Cct3-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
54986	72	ATG ...	MSQ ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC
821368	81	GTG ...	VNL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1222120	42	AGG ...	RST ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
55109	144	TTG ...	LCY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC
128124	42	ATG ...	MAE ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
893176	60	AAG ...	KTQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
53223	132	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1223013	72	AGG ...	RTS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1219507	69	ATA ...	ILR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1224172	180	ATC ...	IQG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14
140891	45	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
1219447	51	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
893703	39	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
1219270	87	ATC ...	IQG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1218668	141	AAG ...	KMM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
895760	132	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
136242	90	ATG ...	MPC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
536396	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
138323	51	GTG ...	VNL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
1219666	48	AAG ...	KRM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
865319	87	ATG ...	MTL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
53256	90	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
820836	75	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
53587	138	ATG ...	MML ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1224441	162	ATA ...	ILR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

363

ENSMUST00000167000

Cct3-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136472	129	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
819859	90	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
536396	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
129080	33	CTG ...	LES ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
141106	81	TTG ...	LHW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
134766	129	GTG ...	VNG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
16725	159	TTG ...	LEI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
53256	90	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
132109	33	TTG ...	LKT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
139238	69	CTG ...	LLR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
135337	60	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
131914	42	TTG ...	LQR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
128124	42	ATG ...	MAE ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
140357	30	CTG ...	LWG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
132026	42	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
139983	57	TTG ...	LLR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
506347	105	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
16998	195	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
135773	42	TTG ...	LQT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E
362	129	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
136234	51	TTG ...	LKR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
136242	90	ATG ...	MPC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E

816828

ENSMUST00000163735

Cct3-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53256	90	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
53262	135	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
54986	72	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain

864479

ENSMUST00000164122

Cct3-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
866626	75	CTG ...	LAT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
865511	81	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
864478	54	ATG ...	MTR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
865319	87	ATG ...	MTL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
818475	90	TTG ...	LMT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
866590	33	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
818453	111	CTG ...	LQF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
866494	36	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
865546	57	GTG ...	VMT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver

1217753

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136242	90	ATG ...	MPC ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

74 ORFs
10 known transcripts
182 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

132026

GTG...

VVL...

GTG

InCDS
Overlapping
sORF
Intronic

E14, MEF, NSC,
Spleen_B_cell, Brain, Liver,
3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

506347

105

CTG...

LLF...

CTG

Intronic
sORF
Alternative
Overlapping
Upstream

Brain, E14, B_cell,
MEF, Spleen_B_cell, Neutrophil,
v6-5, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
819050	ENSMUST00000193666	Cct3-210	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		2	sORFs_org_Mouse

53256

ATG...

MST...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, Spleen_B_cell, B_cell,
BMDC, Brain, E14,
NSC, Testis, v6-5,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
816828	ENSMUST00000163735	Cct3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

139238

CTG...

LLR...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

54986

ATG...

MSQ...

ATG

InCDS
Overlapping
sORF

MEF, 3T3, B_cell,
BMDC, E14, Glioma,
Liver, MESC, Brain,
Neutrophil, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse Johnstone2016
816828	ENSMUST00000163735	Cct3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse

893517

ATC...

ILE...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

865319

ATG...

MTL...

ATG

sORF
Intronic
Alternative
Downstream
Overlapping

MEF, R1E, Liver,
Glioma, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	weak	1	Johnstone2016

139983

TTG...

LLR...

TTG

Intronic
sORF

MEF, Spleen_B_cell, Brain,
Liver, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse

53530

CTG...

LTA...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, E14, Brain,
R1E, BMDC, MEF,
Neutrophil, NSC, Testis,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		2	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1683808

CTG...

LEE...

CTG

InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

895601

153

ATC...

ILE...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

136472

129

GTG...

VAE...

GTG

Intronic
sORF

Brain, Liver, R1E,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		2	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

53262

135

ATG...

MLV...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, B_cell, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
816828	ENSMUST00000163735	Cct3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

821368

GTG...

VNL...

GTG

InCDS
Overlapping
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

132109

TTG...

LKT...

TTG

Intronic
sORF

Brain, Spleen_B_cell, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

53223

132

TTG...

LVQ...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, B_cell, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1222120

AGG...

RST...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1728963

CTG...

LYP...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

818475

TTG...

LMT...

TTG

sORF
Intronic

B_cell, MEF, R1E,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

128124

ATG...

MAE...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, MEF, NSC,
3T3, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

866626

CTG...

LAT...

CTG

Intronic
sORF

Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

819859

CTG...

LGI...

CTG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse

55109

144

TTG...

LCY...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

131914

TTG...

LQR...

TTG

Intronic
sORF

Brain, 3T3, Liver,
R1E, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		4	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

135337

CTG...

LCS...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

1552282

GTG...

VVI...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1730514

153

CTG...

LTA...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

53893

TTG...

LEM...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

R1E, MEF, E14,
Spleen_B_cell, B_cell, Brain,
NSC, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
816828	ENSMUST00000163735	Cct3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

126739

ATG...

MLL...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

Liver, MEF, 3T3,
Brain, R1E, Glioma,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	weak	1	Johnstone2016
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

141106

TTG...

LHW...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Liver, MEF, NSC,
3T3, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

52608

ATG...

MSQ...

ATG

Intronic
sORF
InCDS
Overlapping

Brain, Liver, MEF,
Spleen_B_cell, B_cell, BMDC,
E14, Neutrophil, NSC,
Testis, v6-5, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		4	sORFs_org_Mouse
816828	ENSMUST00000163735	Cct3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

53303

TTG...

LCY...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, Brain, R1E,
MEF, Spleen_B_cell, B_cell,
BMDC, E14, Neutrophil,
NSC, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

138323

GTG...

VNL...

GTG

InCDS
Overlapping
sORF
Intronic

MEF, Brain, E14,
NSC, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

865511

TTG...

LSL...

TTG

Intronic
sORF

Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

128317

ATG...

MVR...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, Brain, R1E,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1553036

GTG...

VPV...

GTG

Intronic
sORF

MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

140357

CTG...

LWG...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, Spleen_B_cell, Neutrophil,
NSC, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

536396

ATG...

MKR...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, R1E, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1552402

GTG...

VSW...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

140891

CTG...

LEE...

CTG

Intronic
sORF
InCDS
Overlapping

Brain, MEF, Spleen_B_cell,
E14, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

507934

ATG...

MMA...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, E14, Liver,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

893176

AAG...

KTQ...

AAG

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

866494

CTG...

LVL...

CTG

sORF
Intronic

R1E, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

129080

CTG...

LES...

CTG

Intronic
sORF
Alternative
Overlapping
Upstream

3T3, Brain, Liver,
R1E, C2C12, MEF,
Neutrophil, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
819050	ENSMUST00000193666	Cct3-210	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

134766

129

GTG...

VNG...

GTG

Intronic
sORF

3T3, B_cell, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

16725

159

TTG...

LEI...

TTG

Intronic
sORF

Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1223013

AGG...

RTS...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1683742

GTG...

VNL...

GTG

InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

135773

TTG...

LQT...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, MEF, 3T3,
Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

818453

111

CTG...

LQF...

CTG

sORF
Intronic
Alternative
Downstream
Overlapping

B_cell, MEF, R1E,
Liver, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1219507

ATA...

ILR...

ATA

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

507791

ATG...

MPF...

ATG

Alternative
InCDS
Overlapping
sORF

E14, Liver, MEF,
Spleen_B_cell, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

53587

138

ATG...

MML...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, Brain, Testis,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

864478

ATG...

MTR...

ATG

Intronic
sORF

Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1224172

180

ATC...

IQG...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1219447

AGG...

RPA...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1728375

102

CTG...

LLP...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

893703

ATT...

ILL...

ATT

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

136234

TTG...

LKR...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, MEF, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

895760

132

ATT...

ILL...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1219270

ATC...

IQG...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

866590

GTG...

VLQ...

GTG

Intronic
sORF

Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1218668

141

AAG...

KMM...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

817047

TTG...

LVY...

TTG

Intronic
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

136242

ATG...

MPC...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Glioma, Liver, MEF,
MESC, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1217753	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

1551500

GTG...

VIS...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
135774	ENSMUST00000164783	Cct3-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1219666

AAG...

KRM...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

16998

195

CTG...

LRE...

CTG

Intronic
sORF

Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse

865546

GTG...

VMT...

GTG

sORF
Intronic

R1E, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
818454	ENSMUST00000168971	Cct3-209	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
864479	ENSMUST00000164122	Cct3-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

507693

ATG...

MAM...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, E14, Liver,
MEF, Spleen_B_cell, v6-5,
3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52609	ENSMUST00000001452	Cct3-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
542803	ENSMUST00000168062	Cct3-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1728525

159

GTG...

VLL...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
140892	ENSMUST00000167718	Cct3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

362

129

CTG...

LSL...

CTG

Intronic
sORF

R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
363	ENSMUST00000167000	Cct3-206	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

820836

CTG...

LEE...

CTG

InCDS
Overlapping
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1224441

162

ATA...

ILR...

ATA

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
542953	ENSMUST00000164166	Cct3-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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