Transcript 363 | MetamORF

Transcript

ID CARD

MetamORF ID

363

ENSMUST00000167000

Name

Cct3-206

Strand

Biotype

retained_intron

Start-end positions

88297123-88321507

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:12462

Aliases

AL024092,
Cct3, Cctg, ENSMUSG00000001416,
MGI:104708, NCBI:12462, OFF:Cct3,
Tcp1-rs3, TriC-P5

Chr 3

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136472	129	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
819859	90	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
536396	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
129080	33	CTG ...	LES ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
141106	81	TTG ...	LHW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
134766	129	GTG ...	VNG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
16725	159	TTG ...	LEI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
53256	90	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
132109	33	TTG ...	LKT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
139238	69	CTG ...	LLR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
135337	60	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
131914	42	TTG ...	LQR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
128124	42	ATG ...	MAE ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
140357	30	CTG ...	LWG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
132026	42	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
139983	57	TTG ...	LLR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
506347	105	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
16998	195	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
135773	42	TTG ...	LQT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E
362	129	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
136234	51	TTG ...	LKR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
136242	90	ATG ...	MPC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E

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