Transcript 52609 | MetamORF

Transcript

ID CARD

MetamORF ID

52609

ENSMUST00000001452

Name

Cct3-201

Strand

Biotype

protein_coding

Start-end positions

88297116-88321767

CDS Start-stop positions

88297236-88321548

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:12462

Aliases

AL024092,
Cct3, Cctg, ENSMUSG00000001416,
MGI:104708, NCBI:12462, OFF:Cct3,
Tcp1-rs3, TriC-P5

Chr 3

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
132026	42	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
139238	69	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
893517	60	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
895601	153	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
128124	42	ATG ...	MAE ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
135337	60	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53256	90	ATG ...	MST ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Testis, v6-5
141106	81	TTG ...	LHW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
53530	69	CTG ...	LTA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
507791	51	ATG ...	MPF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell, v6-5
893176	60	AAG ...	KTQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
140357	30	CTG ...	LWG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC
140891	45	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53587	138	ATG ...	MML ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
136234	51	TTG ...	LKR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
129080	33	CTG ...	LES ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, MEF, Neutrophil
895760	132	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
507934	60	ATG ...	MMA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell
53223	132	TTG ...	LVQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
138323	51	GTG ...	VNL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
52608	60	ATG ...	MSQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
54986	72	ATG ...	MSQ ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
55109	144	TTG ...	LCY ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
53893	96	TTG ...	LEM ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Testis, v6-5
128317	30	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
506347	105	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, v6-5
818453	111	CTG ...	LQF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
893703	39	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
507693	57	ATG ...	MAM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Spleen_B_cell, v6-5
536396	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
53262	135	ATG ...	MLV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
53303	51	TTG ...	LCY ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
126739	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

Export data