Gene Gm28052 | MetamORF

Gene

ID CARD

Gm28052

Aliases

Gm28052

Chromosome

Transcripts

26 ORFs
1 known transcript
26 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

379630

ENSMUST00000150388

Gm28052-201

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
382880	135	GTG ...	VEY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1861695	102	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
380868	126	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
383484	99	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
384286	30	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
384511	63	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1627112	66	ATG ...	MTR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1192244	39	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
379582	51	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
387124	210	CTG ...	LNC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
955923	42	AAG ...	KQF ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
379629	51	GTG ...	VYG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1194652	60	AAG ...	KQF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
387503	99	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
701077	30	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
383530	135	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
386430	42	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
382618	105	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1862056	96	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
388093	78	CTG ...	LMI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
422180	135	CTG ...	LTQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
384043	75	GTG ...	VDN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
384993	42	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
481891	72	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
388558	69	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
384288	54	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

ORFs

26 ORFs
1 known transcript
26 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

382880

135

GTG...

VEY...

GTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

384288

GTG...

VKE...

GTG

InCDS
NMD
Overlapping
sORF
Intronic
ncRNA

E14, v6-5, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
384044	ENSMUST00000172800	Rnf8-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1861695

102

TTG...

LTL...

TTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

379582

CTG...

LKQ...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, R1E,
Spleen_B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

380868

126

CTG...

LQF...

CTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

387503

CTG...

LDN...

CTG

Intronic
sORF
ncRNA
Downstream
NMD
InCDS
Overlapping

3T3, Brain, R1E,
B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
384044	ENSMUST00000172800	Rnf8-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

383484

CTG...

LIS...

CTG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping

R1E, Spleen_B_cell, B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

384286

ATG...

MAP...

ATG

Alternative
sORF
Upstream
ncRNA

3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC, Spleen_B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
381545	ENSMUST00000048677	Tbc1d22b-201	protein_coding	Ribo-seq	strong	5	sORFs_org_Mouse Johnstone2016
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

384511

CTG...

LAE...

CTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1627112

ATG...

MTR...

ATG

ncRNA
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1626540	ENSMUST00000162588	Rnf8-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

388093

CTG...

LMI...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

1192244

AGG...

RRR...

AGG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

383530

135

GTG...

VTI...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

422180

135

CTG...

LTQ...

CTG

InCDS
NMD
Overlapping
sORF
ncRNA

BMDC, C2C12, E14,
3T3, B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
701335	ENSMUST00000130423	Cmtr1-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

387124

210

CTG...

LNC...

CTG

ncRNA
sORF
Downstream
NMD
InCDS
Overlapping

R1E, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

955923

AAG...

KQF...

AAG

ncRNA
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

384043

GTG...

VDN...

GTG

Intronic
sORF
InCDS
NMD
Overlapping
ncRNA

Brain, MEF, v6-5,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
384044	ENSMUST00000172800	Rnf8-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

379629

GTG...

VYG...

GTG

ncRNA
sORF

Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

382618

105

CTG...

LVL...

CTG

Downstream
NMD
sORF
Intronic
ncRNA
InCDS
Overlapping

Brain, 3T3, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
384044	ENSMUST00000172800	Rnf8-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

386430

CTG...

LQT...

CTG

Alternative
Downstream
NMD
sORF
ncRNA

Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1194652

AAG...

KQF...

AAG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

701077

CTG...

LVQ...

CTG

ncRNA
sORF
Downstream
NMD

R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

388558

TTG...

LEK...

TTG

Downstream
NMD
sORF
InCDS
Overlapping
ncRNA

3T3, Brain, E14,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

384993

CTG...

LKQ...

CTG

Downstream
NMD
sORF
ncRNA

3T3, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379583	ENSMUST00000172485	Rnf8-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1862056

CTG...

LQR...

CTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

481891

CTG...

LGG...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA
Upstream

3T3, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36078	ENSMUST00000130871	Gm28043-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
379630	ENSMUST00000150388	Gm28052-201	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
385820	ENSMUST00000024816	Cmtr1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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