Transcript 36078 | MetamORF

Transcript

ID CARD

MetamORF ID

36078

ENSMUST00000130871

Name

Gm28043-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

29614876-29703359

CDS Start-stop positions

29614968-29685974

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:106014251

Aliases

Gm28043,
MGI:5547779, NCBI:106014251, OFF:Gm28043,
Rnf8-cmtr1

Chr 17

ORFs

76 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
705414	48	ATG ...	MDE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, v6-5
384288	54	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
482020	138	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
36185	177	GTG ...	VCK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Testis, v6-5
707184	51	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC
38288	159	GTG ...	VGI ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, E14, MEF, Testis, v6-5
956991	33	AGG ...	RCL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14
956179	54	ATC ...	IVA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
708272	84	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
36083	57	CTG ...	LSK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Testis, v6-5
411060	183	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	C2C12
956681	54	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1626269	81	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
706247	36	TTG ...	LCP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
385819	69	TTG ...	LGE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
956220	108	AAG ...	KLD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
38349	51	GTG ...	VKA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, Testis, v6-5
382821	93	TTG ...	LGW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
955824	51	AAG ...	KED ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
955185	180	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
422180	135	CTG ...	LTQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, C2C12, E14
954544	78	AGG ...	RKF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14
956232	54	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
37901	180	GTG ...	VVC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Testis, v6-5
37943	63	TTG ...	LMV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Testis, v6-5
955554	60	ATC ...	IQT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
954718	60	AAG ...	KLS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
955464	147	ATC ...	IYT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
956301	99	AAG ...	KMP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
36627	51	GTG ...	VCL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, E14, MEF, Testis, v6-5
36440	36	CTG ...	LAK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	Brain, MEF, Testis
386368	69	ATG ...	MHC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14
956551	39	AGG ...	RTS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
36190	42	GTG ...	VYR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Testis, v6-5
481957	42	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
1358476	45	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
382306	42	TTG ...	LIV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
36077	57	GTG ...	VIK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, E14, MEF, Testis, v6-5
382394	48	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
37062	75	CTG ...	LVV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	Brain, MEF, Testis, v6-5
481612	96	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
954541	48	ACG ...	TTG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
954892	48	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
36828	48	GTG ...	VPT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	Brain, MEF, Testis
387489	54	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
384694	60	GTG ...	VSK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, v6-5
1625570	90	ATG ...	MLA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1496706	39	CTG ...	LWG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
387124	210	CTG ...	LNC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
384043	75	GTG ...	VDN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
955266	132	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
388089	84	CTG ...	LVA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
37826	51	GTG ...	VKE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Testis, v6-5
479029	30	ATG ...	MWT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
956411	90	AAG ...	KSN ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14
956912	153	ATA ...	IDD ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14
411044	138	AAG ...	KRI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	C2C12
36386	81	GTG ...	VTP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Testis
37700	90	GTG ...	VGL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, E14, MEF, Testis, v6-5
479262	57	ATG ...	MKQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
481891	72	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1190865	42	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
387384	33	GTG ...	VQS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, v6-5
479777	33	CTG ...	LGV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
379627	105	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
379582	51	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
955878	60	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1496782	63	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
388558	69	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1191713	114	AAG ...	KLI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
387503	99	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
382618	105	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
36953	72	CTG ...	LYC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, E14, MEF, Testis, v6-5
37738	165	CTG ...	LKV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Testis, v6-5
36798	123	GTG ...	VNI ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Testis, v6-5
388453	66	ATG ...	MPV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, v6-5

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