Transcript 379630

Transcript

ID CARD

MetamORF ID

379630

ENSMUST00000150388

Name

Gm28052-201

Strand

Biotype

processed_transcript

Start-end positions

29549799-29674187

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

Gm28052

Aliases

Gm28052

Chr 17

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
382880	135	GTG ...	VEY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1861695	102	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
380868	126	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
383484	99	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
384286	30	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
384511	63	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1627112	66	ATG ...	MTR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1192244	39	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
379582	51	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
387124	210	CTG ...	LNC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
955923	42	AAG ...	KQF ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
379629	51	GTG ...	VYG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1194652	60	AAG ...	KQF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
387503	99	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
701077	30	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
383530	135	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
386430	42	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
382618	105	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1862056	96	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
388093	78	CTG ...	LMI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
422180	135	CTG ...	LTQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
384043	75	GTG ...	VDN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
384993	42	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
481891	72	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
388558	69	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
384288	54	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

Export data