Gene Gm28036 | MetamORF

Gene

ID CARD

Gm28036

Aliases

Gm28036

Chromosome

Transcripts

104 ORFs
4 known transcripts
134 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

969708

ENSMUST00000159952

Gm28036-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1167398	48	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
49251	51	TTG ...	LTW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, v6-5
499154	42	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
969707	93	AGG ...	RMA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
1053506	39	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1163326	33	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1163757	54	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1163633	78	ATG ...	MML ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
47642	63	TTG ...	LPT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
1167856	54	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
741199	75	CTG ...	LQW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
48434	39	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
1161008	60	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1054813	33	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
1165801	39	ATG ...	MDP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
49501	60	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Liver
1162264	57	TTG ...	LVM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
728453	99	GTG ...	VKR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1163266	30	ATG ...	MKP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
94334	48	GTG ...	VFA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	E14, MEF
1161366	81	ATG ...	MEC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
1164960	87	GTG ...	VCM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1166906	51	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1638599	81	GTG ...	VTC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
96481	96	GTG ...	VAF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	NSC, v6-5
1777257	144	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1164350	39	ATG ...	MWK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	NSC, v6-5
1637348	39	ATG ...	MLV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF
1165155	60	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
737501	45	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
731842	54	CTG ...	LNV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	E14, MEF
1161882	72	CTG ...	LTI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
735862	90	CTG ...	LWR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1054234	39	TTG ...	LVA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1163927	222	GTG ...	VQN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
95146	45	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
1165163	30	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	NSC, v6-5
1164343	81	CTG ...	LCP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
96169	42	CTG ...	LMA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
1163794	75	ATG ...	MLT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
1162955	51	ATG ...	MLG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
101028	36	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1165423	30	ATG ...	MGK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
106874	48	CTG ...	LKM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1161665	66	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1163604	63	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1639292	72	ATG ...	MPD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
1641713	75	CTG ...	LMP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1163289	33	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
104976	42	ATG ...	MTH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF
1167271	60	GTG ...	VNW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1162792	30	GTG ...	VQE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1164690	42	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1165757	72	TTG ...	LKQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
102136	36	TTG ...	LRD ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	NMD sORF	E14, MEF

44443

ENSMUST00000132494

Gm28036-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48032	252	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
96742	51	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
44442	243	TTG ...	LTD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
811520	33	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
106874	48	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
495509	78	TTG ...	LRS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
493443	96	GTG ...	VWA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
47291	255	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
730705	90	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
498419	57	ATG ...	MQM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
101028	36	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
47733	228	GTG ...	VTD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1642232	84	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
737676	75	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
100759	69	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
810455	108	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
731842	54	CTG ...	LNV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
49443	219	GTG ...	VEA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
99250	42	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
813036	33	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
49393	180	CTG ...	LPM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
104326	87	CTG ...	LHY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF
1165801	39	ATG ...	MDP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
44677	195	GTG ...	VDA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1164690	42	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
102136	36	TTG ...	LRD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	CDS NMD sORF	MEF
739980	60	GTG ...	VWT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
1723492	54	ATG ...	MGM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
47086	168	GTG ...	VII ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
729092	84	TTG ...	LNV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
740721	33	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
729580	69	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
499154	42	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
494855	87	GTG ...	VRI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
808725	120	CTG ...	LDA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
727768	45	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1054234	39	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF Upstream	MEF
809824	39	ATG ...	MAT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
94334	48	GTG ...	VFA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
728962	78	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
47408	138	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF, Testis
1162955	51	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
812813	153	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
735905	90	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
112671	78	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF
106073	78	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
734401	48	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
104976	42	ATG ...	MTH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
44681	102	GTG ...	VPT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
48095	249	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1723757	57	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
44832	159	GTG ...	VGV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
46829	198	GTG ...	VVD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1725577	30	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF
48684	132	GTG ...	VDF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF, Testis
1724017	45	GTG ...	VNG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
737948	39	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC

1680179

ENSMUST00000127956

Gm28036-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
112671	78	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
811520	33	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
102136	36	TTG ...	LRD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
731842	54	CTG ...	LNV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1638599	81	GTG ...	VTC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
94334	48	GTG ...	VFA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
104326	87	CTG ...	LHY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
728962	78	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
100759	69	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
99250	42	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
813036	33	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
96742	51	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1680408	39	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
735905	90	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF

47643

ENSMUST00000160165

Gm28036-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49501	60	GTG ...	VEG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, Testis
95146	45	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
97840	57	CTG ...	LHF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
112515	36	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	Brain
49251	51	TTG ...	LTW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
48434	39	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Testis
96169	42	CTG ...	LMA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
47642	63	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis

ORFs

104 ORFs
4 known transcripts
134 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

740721

TTG...

LEP...

TTG

NMD
sORF
Alternative
InCDS
Overlapping
Downstream

MEF, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

48032

252

CTG...

LLL...

CTG

Intronic
sORF
Downstream
NMD

R1E, B_cell, Testis,
Brain, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

730705

CTG...

LSL...

CTG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

R1E, B_cell, MEF,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		1	sORFs_org_Mouse

493443

GTG...

VWA...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

3T3, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1167398

TTG...

LIF...

TTG

NMD
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

49251

TTG...

LTW...

TTG

NMD
sORF
Alternative
Upstream

E14, MEF, Neutrophil,
v6-5, 3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

96742

CTG...

LTA...

CTG

Intronic
sORF
Downstream
NMD

Brain, R1E, B_cell,
MEF, E14, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		4	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

104326

CTG...

LHY...

CTG

Intronic
sORF
Downstream
NMD
InCDS
Overlapping

E14, MEF, Neutrophil,
v6-5, R1E, B_cell,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		5	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

737501

CTG...

LGL...

CTG

Alternative
sORF
Upstream
NMD
Intronic

E14, MEF, Neutrophil,
R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1207158	ENSMUST00000109607	Cpne1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

112671

CTG...

LSP...

CTG

NMD
sORF
Intronic
Downstream
InCDS
Overlapping

MEF, R1E, E14,
Neutrophil, v6-5, B_cell,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		5	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

49501

GTG...

VEG...

GTG

NMD
sORF

Brain, Testis, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1165801

ATG...

MDP...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016

499154

TTG...

LRL...

TTG

NMD
sORF
Intronic
Alternative
Downstream
InCDS
Overlapping

MEF, R1E, 3T3,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
499155	ENSMUST00000136296	Cpne1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

44442

243

TTG...

LTD...

TTG

Downstream
NMD
sORF
Intronic

B_cell, Testis, Brain,
R1E, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

49393

180

CTG...

LPM...

CTG

NMD
sORF
Intronic
Downstream

Neutrophil, v6-5, R1E,
B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

811520

GTG...

VGS...

GTG

NMD
sORF
Downstream
Intronic
InCDS
Overlapping

MEF, B_cell, E14,
Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		3	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

104976

ATG...

MTH...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Upstream
Intronic

Glioma, Liver, MEF,
MESC, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

741199

CTG...

LQW...

CTG

Alternative
sORF
Upstream
NMD

E14, R1E, MEF,
Neutrophil, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1207158	ENSMUST00000109607	Cpne1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1167856

ATG...

MSL...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

Glioma, Liver, MEF,
MESC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

969707

AGG...

RMA...

AGG

NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1053506

CTG...

LSA...

CTG

NMD
sORF
Alternative
Upstream
Intronic

MEF, Neutrophil, E14,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
1207158	ENSMUST00000109607	Cpne1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

95146

CTG...

LLM...

CTG

NMD
sORF

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

731842

CTG...

LNV...

CTG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

R1E, BMDC, MEF,
3T3, B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
808191	ENSMUST00000142960	Cpne1-208	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

1163326

TTG...

LPL...

TTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1163757

GTG...

VML...

GTG

NMD
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

812813

153

GTG...

VGG...

GTG

NMD
sORF
Intronic
Downstream

Neutrophil, v6-5, R1E,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1163633

ATG...

MML...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

MEF, v6-5, Glioma,
Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016

49443

219

GTG...

VEA...

GTG

Intronic
sORF
NMD
Downstream

R1E, Brain, Neutrophil,
v6-5, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

729092

TTG...

LNV...

TTG

InCDS
Overlapping
sORF
Intronic
Alternative
Downstream
NMD

3T3, R1E, B_cell,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

48434

CTG...

LLL...

CTG

Alternative
sORF
Upstream
NMD

3T3, E14, MEF,
v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

47642

TTG...

LPT...

TTG

NMD
sORF

MEF, Neutrophil, v6-5,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

46829

198

GTG...

VVD...

GTG

Intronic
sORF
NMD
Downstream

R1E, Neutrophil, v6-5,
B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

106874

CTG...

LKM...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic
Upstream

MEF, R1E, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

495509

TTG...

LRS...

TTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

B_cell, MEF, 3T3,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

737948

TTG...

LVL...

TTG

NMD
sORF
Alternative
InCDS
Overlapping
Downstream

MEF, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

47291

255

GTG...

VLL...

GTG

Downstream
NMD
sORF
Intronic

B_cell, Testis, Brain,
Neutrophil, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse

498419

ATG...

MQM...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

B_cell, Spleen_B_cell, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

101028

CTG...

LSR...

CTG

Alternative
Downstream
NMD
sORF
Intronic
InCDS
Overlapping

MEF, Brain, R1E,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

47733

228

GTG...

VTD...

GTG

Downstream
NMD
sORF
Intronic

B_cell, Testis, MEF,
Neutrophil, v6-5, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse

44832

159

GTG...

VGV...

GTG

Intronic
sORF
NMD
Downstream

R1E, Neutrophil, v6-5,
B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1161008

CTG...

LLS...

CTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

48684

132

GTG...

VDF...

GTG

Intronic
sORF
Downstream
NMD

Brain, R1E, E14,
MEF, Neutrophil, v6-5,
B_cell, BMDC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		5	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

1642232

ATG...

MRR...

ATG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

44677

195

GTG...

VDA...

GTG

Intronic
sORF
Downstream
NMD

R1E, B_cell, Testis,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

102136

TTG...

LRD...

TTG

NMD
sORF
Alternative
InCDS
Overlapping
CDS
Intronic

MEF, 3T3, Liver,
Brain, R1E, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

1054813

ATG...

MFL...

ATG

NMD
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

808725

120

CTG...

LDA...

CTG

NMD
sORF
Downstream
Intronic

Neutrophil, B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse

737676

ATG...

MTV...

ATG

Downstream
NMD
sORF
Intronic
Alternative
InCDS
Overlapping

B_cell, E14, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

100759

CTG...

LKS...

CTG

Alternative
Downstream
NMD
sORF
Intronic
InCDS
Overlapping

B_cell, MEF, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse

810455

108

GTG...

VRC...

GTG

Alternative
Downstream
NMD
sORF
Intronic

B_cell, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

47086

168

GTG...

VII...

GTG

Intronic
sORF
Downstream
NMD

R1E, B_cell, Testis,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

728453

GTG...

VKR...

GTG

Alternative
sORF
Upstream
NMD

3T3, MEF, Neutrophil,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
808191	ENSMUST00000142960	Cpne1-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1164350

ATG...

MWK...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Glioma, Liver, MEF,
MESC, NSC, v6-5,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

99250

CTG...

LWS...

CTG

Downstream
NMD
sORF
Intronic

B_cell, MEF, Brain,
R1E, E14, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		3	sORFs_org_Mouse

813036

GTG...

VER...

GTG

Alternative
Downstream
NMD
sORF
Intronic

B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

94334

GTG...

VFA...

GTG

Intronic
sORF
NMD
Alternative
Downstream
InCDS
Overlapping

Brain, R1E, B_cell,
E14, MEF, BMDC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
808191	ENSMUST00000142960	Cpne1-208	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

735905

GTG...

VNI...

GTG

InCDS
Overlapping
sORF
Intronic
Alternative
Downstream
NMD

3T3, R1E, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1162264

TTG...

LVM...

TTG

NMD
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

809824

ATG...

MAT...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
499855	ENSMUST00000079312	Cpne1-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

739980

GTG...

VWT...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

3T3, B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

97840

CTG...

LHF...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

112515

ATG...

MSS...

ATG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

729580

CTG...

LTH...

CTG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

R1E, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1163266

ATG...

MKP...

ATG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1164690

CTG...

LLC...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1161366

ATG...

MEC...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

v6-5, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

1164960

GTG...

VCM...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1638599

GTG...

VTC...

GTG

NMD
sORF
Intronic

MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

106073

GTG...

VST...

GTG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

MEF, Brain, R1E,
B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1166906

GTG...

VRL...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

735862

CTG...

LWR...

CTG

Alternative
sORF
Upstream
NMD

E14, R1E, MEF,
Neutrophil, B_cell, BMDC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1207158	ENSMUST00000109607	Cpne1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
808191	ENSMUST00000142960	Cpne1-208	protein_coding	Ribo-seq		2	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1723492

ATG...

MGM...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

MEF, Glioma, Liver,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	strong	1	Johnstone2016

44681

102

GTG...

VPT...

GTG

Intronic
sORF
Alternative
Downstream
NMD

R1E, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

96481

GTG...

VAF...

GTG

NMD
sORF
Intronic

NSC, v6-5, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse

47408

138

GTG...

VGV...

GTG

Intronic
sORF
Downstream
NMD

Brain, R1E, B_cell,
BMDC, MEF, Testis,
E14, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		2	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
1052754	ENSMUST00000183353	Cpne1-214	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1777257

144

CTG...

LQV...

CTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

494855

GTG...

VRI...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

3T3, Spleen_B_cell, E14,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
1207158	ENSMUST00000109607	Cpne1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

728962

TTG...

LTR...

TTG

InCDS
Overlapping
sORF
Intronic
NMD
Alternative
Downstream

3T3, R1E, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1637348

ATG...

MLV...

ATG

NMD
sORF
Alternative
InCDS
Overlapping
Intronic

MEF, Glioma, Liver,
MESC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
2245248	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	weak	1	Johnstone2016

1165155

GTG...

VGR...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

727768

CTG...

LHL...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

BMDC, 3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

48095

249

TTG...

LLL...

TTG

Downstream
NMD
sORF
Intronic

Brain, B_cell, Testis,
R1E, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
99779	ENSMUST00000147627	Cpne1-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1871148	ENSMUST00000184933	Cpne1-218	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1051997	ENSMUST00000183733	Cpne1-215	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1054234

TTG...

LVA...

TTG

NMD
sORF
Upstream

MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

734401

CTG...

LAP...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121743	ENSMUST00000109608	Cpne1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1161882

CTG...

LTI...

CTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1163927

222

GTG...

VQN...

GTG

NMD
sORF
Intronic

MEF, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
94335	ENSMUST00000142975	Cpne1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1165163

TTG...

LCL...

TTG

NMD
sORF

NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1162955

ATG...

MLG...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

MEF, v6-5, Glioma,
Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
2245462	ENSMUST00000109604	Rbm12-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

1164343

CTG...

LCP...

CTG

NMD
sORF

E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

96169

CTG...

LMA...

CTG

NMD
sORF

Liver, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
47643	ENSMUST00000160165	Gm28036-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1163794

ATG...

MLT...

ATG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1165423

ATG...

MGK...

ATG

NMD
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1680408

TTG...

LPL...

TTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680179	ENSMUST00000127956	Gm28036-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1723757

CTG...

LPK...

CTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1161665

CTG...

LQW...

CTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1163604

GTG...

VPL...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1639292

ATG...

MPD...

ATG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1641713

CTG...

LMP...

CTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1163289

GTG...

VGS...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1167271

GTG...

VNW...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1725577

TTG...

LVL...

TTG

Alternative
NMD
sORF
Upstream

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1162792

GTG...

VQE...

GTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1165757

TTG...

LKQ...

TTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
969708	ENSMUST00000159952	Gm28036-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1724017

GTG...

VNG...

GTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44443	ENSMUST00000132494	Gm28036-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

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