Transcript 44443 | MetamORF

Transcript

ID CARD

MetamORF ID

44443

ENSMUST00000132494

Name

Gm28036-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

156071845-156111901

CDS Start-stop positions

156079421-156098350

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

Gm28036

Aliases

Gm28036

Chr 2

ORFs

57 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48032	252	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
96742	51	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
44442	243	TTG ...	LTD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
811520	33	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
106874	48	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
495509	78	TTG ...	LRS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
493443	96	GTG ...	VWA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
47291	255	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
730705	90	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
498419	57	ATG ...	MQM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
101028	36	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
47733	228	GTG ...	VTD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1642232	84	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
737676	75	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
100759	69	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
810455	108	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
731842	54	CTG ...	LNV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
49443	219	GTG ...	VEA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
99250	42	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
813036	33	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
49393	180	CTG ...	LPM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
104326	87	CTG ...	LHY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF
1165801	39	ATG ...	MDP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
44677	195	GTG ...	VDA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1164690	42	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
102136	36	TTG ...	LRD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	CDS NMD sORF	MEF
739980	60	GTG ...	VWT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
1723492	54	ATG ...	MGM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
47086	168	GTG ...	VII ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
729092	84	TTG ...	LNV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
740721	33	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
729580	69	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
499154	42	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
494855	87	GTG ...	VRI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
808725	120	CTG ...	LDA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
727768	45	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1054234	39	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF Upstream	MEF
809824	39	ATG ...	MAT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
94334	48	GTG ...	VFA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
728962	78	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
47408	138	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF, Testis
1162955	51	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
812813	153	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
735905	90	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
112671	78	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF
106073	78	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
734401	48	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
104976	42	ATG ...	MTH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
44681	102	GTG ...	VPT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
48095	249	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1723757	57	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
44832	159	GTG ...	VGV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
46829	198	GTG ...	VVD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Testis
1725577	30	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF
48684	132	GTG ...	VDF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, BMDC, MEF, Testis
1724017	45	GTG ...	VNG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
737948	39	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC

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