Transcript 1052754

Transcript

ID CARD

MetamORF ID

1052754

ENSMUST00000183353

Name

Cpne1-214

Strand

Biotype

retained_intron

Start-end positions

156077420-156078591

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:266692

Aliases

1810028N16Rik,
Cpne1, ENSMUSG00000074643, MGI:2386621,
mKIAA4108, NCBI:266692, OFF:Cpne1

Chr 2

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104326	87	CTG ...	LHY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
811520	33	GTG ...	VGS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
731078	69	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, NSC
100759	69	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
48684	132	GTG ...	VDF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
106073	78	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
810455	108	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
737676	75	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
112671	78	CTG ...	LSP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
96742	51	CTG ...	LTA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
730705	90	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
99250	42	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
813036	33	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
47408	138	GTG ...	VGV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5

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