Gene ENSMUSG00000043858

Gene

ID CARD

ENSMUSG00000043858

Aliases

ENSMUSG00000043858

Chromosome

Transcripts

5 ORFs
1 known transcript
5 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

2536091

ENSMUST00000107891

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
531025	225	ATG ...	MPS ...	Ribo-seq	ATG		1	Johnstone2016	sORF	Glioma, Liver, MEF, MESC
532635	144	ATG ...	MHT ...	Ribo-seq	ATG		1	Johnstone2016	sORF	Glioma, Liver, MEF, MESC
598084	45	ATG ...	MGR ...	Ribo-seq	ATG		1	Johnstone2016	sORF	Glioma, Liver, MEF, MESC
223485	96	ATG ...	MRS ...	Ribo-seq	ATG		1	Johnstone2016	sORF	Glioma, Liver, MEF, MESC
1689722	45	ATG ...	MMF ...	Ribo-seq	ATG		1	Johnstone2016	sORF	Glioma, Liver, MEF, MESC

ORFs

5 ORFs
1 known transcript
5 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

531025

225

ATG...

MPS...

ATG

sORF
Alternative
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, 3T3, E14,
Spleen_B_cell, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2536091	ENSMUST00000107891			Ribo-seq		1	Johnstone2016
3721	ENSMUST00000057195	Nup62-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
3197619	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
753501	ENSMUST00000207103	Nup62-203	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

223485

ATG...

MRS...

ATG

sORF
Alternative
InCDS
Overlapping

3T3, Brain,
E14, Spleen_B_cell, MEF,
Glioma, Liver, MESC,
B_cell, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3197619	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
3721	ENSMUST00000057195	Nup62-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
73913	ENSMUST00000208626	Nup62-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
2536091	ENSMUST00000107891			Ribo-seq		1	Johnstone2016
753501	ENSMUST00000207103	Nup62-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

532635

144

ATG...

MHT...

ATG

sORF
Alternative
Downstream
Overlapping

Glioma, Liver, MEF,
MESC, B_cell, v6-5,
3T3, BMDC,
E14, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2536091	ENSMUST00000107891			Ribo-seq		1	Johnstone2016
753501	ENSMUST00000207103	Nup62-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
3197619	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
3721	ENSMUST00000057195	Nup62-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

598084

ATG...

MGR...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, Glioma, Liver,
MEF, MESC, 3T3,
BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753501	ENSMUST00000207103	Nup62-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
2536091	ENSMUST00000107891			Ribo-seq		1	Johnstone2016
3721	ENSMUST00000057195	Nup62-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

1689722

ATG...

MMF...

ATG

Alternative
Downstream
sORF

MEF, Glioma, Liver,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73913	ENSMUST00000208626	Nup62-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2536091	ENSMUST00000107891			Ribo-seq		1	Johnstone2016

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