Transcript 753501

Transcript

ID CARD

MetamORF ID

753501

ENSMUST00000207103

Name

Nup62-203

Strand

Biotype

protein_coding

Start-end positions

44816383-44830804

CDS Start-stop positions

44828563-44830143

CDS Relative positions

173-1753

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:18226

Aliases

D7Ertd649e,
ENSMUSG00000109511, MGI:1351500, NCBI:18226,
Nup62, Nupc1, OFF:Nup62,
p62

Chr 7

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1318361	111	CTG ...	LEQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
4459	57	TTG ...	LML ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, v6-5
423423	213	GTG ...	VAA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
534796	246	TTG ...	LAA ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
534521	168	TTG ...	LAL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E
212871	87	GTG ...	VRR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, v6-5
1322425	99	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
590860	63	GTG ...	VRA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
592313	234	CTG ...	LRP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
424044	150	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
593424	219	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
1098335	48	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
598084	45	ATG ...	MGR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
422556	84	GTG ...	VES ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E
1097203	45	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1814897	51	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
533753	99	CTG ...	LMR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, v6-5
1790253	30	GTG ...	VQG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
532635	144	ATG ...	MHT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, v6-5
1102235	42	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
424220	195	GTG ...	VAL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, R1E, v6-5
3720	54	ATG ...	MLS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, v6-5
532820	297	GTG ...	VDL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, v6-5
1320701	96	GTG ...	VPP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
753500	57	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
531920	39	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
535176	111	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
595751	198	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E, v6-5
592599	45	CTG ...	LPH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1817371	54	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1318151	141	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
531769	252	TTG ...	LGL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
533230	249	TTG ...	LGP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
424198	264	CTG ...	LAA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
597174	57	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1322286	144	GTG ...	VLG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
534151	180	CTG ...	LAL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
424088	123	GTG ...	VAP ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Neutrophil, R1E, v6-5
533907	285	CTG ...	LPH ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
535268	66	TTG ...	LQT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, v6-5
596842	165	TTG ...	LGL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
534927	177	GTG ...	VTH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, v6-5
423333	57	CTG ...	LTD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil, v6-5
73912	48	ATG ...	MAA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, R1E, v6-5
531428	48	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, v6-5
592883	69	TTG ...	LEQ ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
1100382	36	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
224187	87	CTG ...	LQD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
591650	144	CTG ...	LRP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
595289	192	CTG ...	LAP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
597009	33	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
424181	261	CTG ...	LAA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
534314	51	TTG ...	LRM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
591398	159	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
535228	129	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
533368	189	CTG ...	LQT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, R1E, v6-5
596609	213	CTG ...	LAF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
535105	267	CTG ...	LLA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
423170	105	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
843541	105	CTG ...	LPC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
424074	54	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
223485	96	ATG ...	MRS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, v6-5
531036	285	TTG ...	LEA ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
534080	174	TTG ...	LSL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
531512	198	CTG ...	LVA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, R1E, v6-5
222046	66	CTG ...	LRT ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, v6-5
595424	51	CTG ...	LEE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
531025	225	ATG ...	MPS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5

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