Transcript 3721 | MetamORF

Transcript

ID CARD

MetamORF ID

3721

ENSMUST00000057195

Name

Nup62-201

Strand

Biotype

protein_coding

Start-end positions

44816088-44830812

CDS Start-stop positions

44828563-44830143

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:18226

Aliases

D7Ertd649e,
ENSMUSG00000109511, MGI:1351500, NCBI:18226,
Nup62, Nupc1, OFF:Nup62,
p62

Chr 7

ORFs

71 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
424081	93	CTG ...	LEP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
531025	225	ATG ...	MPS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
535105	267	CTG ...	LLA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
595751	198	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
595424	51	CTG ...	LEE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
535228	129	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
596609	213	CTG ...	LAF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
212871	87	GTG ...	VRR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
592599	45	CTG ...	LPH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
422556	84	GTG ...	VES ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
597174	57	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
74263	81	TTG ...	LAR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell, v6-5
596842	165	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1256682	30	AAG ...	KWH ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
590860	63	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14
534080	174	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
424044	150	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
534314	51	TTG ...	LRM ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
1251984	129	AGG ...	RSS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1252326	150	AGG ...	RSY ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
74817	102	CTG ...	LKG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
534927	177	GTG ...	VTH ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, Spleen_B_cell
1256483	72	AAG ...	KAR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF Upstream	E14
534521	168	TTG ...	LAL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
424181	261	CTG ...	LAA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
531769	252	TTG ...	LGL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
533230	249	TTG ...	LGP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
423423	213	GTG ...	VAA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
4459	57	TTG ...	LML ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor
534151	180	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
1255642	51	AGG ...	RSW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
532635	144	ATG ...	MHT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, BMDC, E14, Spleen_B_cell
534796	246	TTG ...	LAA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
535268	66	TTG ...	LQT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14
73912	48	ATG ...	MAA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, Spleen_B_cell
3720	54	ATG ...	MLS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Skin_tumor
424088	123	GTG ...	VAP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
591650	144	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1250564	216	AAG ...	KSE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
535099	126	CTG ...	LTR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
592313	234	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
531428	48	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
533907	285	CTG ...	LPH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
593424	219	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
591398	159	CTG ...	LQQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1254183	69	ATC ...	IRS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
222046	66	CTG ...	LRT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
531920	39	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	E14, Spleen_B_cell
1254139	168	ATT ...	ILG ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1250943	99	AAG ...	KLD ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
592883	69	TTG ...	LEQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
223485	96	ATG ...	MRS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Spleen_B_cell
423170	105	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1254470	51	AGG ...	RNR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
595289	192	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
424198	264	CTG ...	LAA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
224187	87	CTG ...	LQD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Spleen_B_cell
424074	54	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
423333	57	CTG ...	LTD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14
1256834	60	ATC ...	IRS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
535176	111	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
533753	99	CTG ...	LMR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
911991	36	AGG ...	RRG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
531036	285	TTG ...	LEA ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Spleen_B_cell
532820	297	GTG ...	VDL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
533368	189	CTG ...	LQT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, Spleen_B_cell
424220	195	GTG ...	VAL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, Spleen_B_cell
597009	33	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
531512	198	CTG ...	LVA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Spleen_B_cell
1251829	45	AGG ...	RAL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
598084	45	ATG ...	MGR ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14

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