Metam
ORF

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Gene

Gene

ID CARD

ID

HGNC:13195

Aliases

ENSG00000122952
HGNC:13195, KNTC2AP, NCBI:11130
OFF:ZWINT, SIP30, ZWINT
Zwint1

Chromosome

10

Transcripts

77 ORFs
6 known transcripts
79 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

1842 ENST00000478181 ZWINT-207 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

901261 201

AGA ...

RSI ...

Ribo-seq
AGA

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1829 168

CTG ...

LLF ...

Ribo-seq
CTG

7 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1
1295671 60

CTG ...

LAG ...

Ribo-seq
CTG

1 sORFs_org_Human
    ncRNA
    sORF
HEK293T
1841 279

TTG ...

LSS ...

Ribo-seq
TTG

19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1818 165

TTG ...

LFP ...

Ribo-seq
TTG

7 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
1816 54

GTG ...

VSF ...

Ribo-seq
GTG

6 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
hES, LCL, RPE-1
1295673 78

ATG ...

MSA ...

Ribo-seq
ATG

1 sORFs_org_Human
    ncRNA
    sORF
HEK293T
1113 ENST00000460654 ZWINT-205 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1834 204

CTG ...

LKQ ...

Ribo-seq
CTG

27 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
406273 240

CAG ...

QEL ...

Ribo-seq
CAG

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1814 225

GTG ...

VFQ ...

Ribo-seq
GTG

27 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
406261 210

GGA ...

GNL ...

Ribo-seq
GGA

2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
1112 267

GTG ...

VRE ...

Ribo-seq
GTG

26 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1816 54

GTG ...

VSF ...

Ribo-seq
GTG

17 sORFs_org_Human
    ncRNA
    sORF
BJ, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
1818 165

TTG ...

LFP ...

Ribo-seq
TTG

23 sORFs_org_Human
    ncRNA
    sORF
BJ, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
loayza_puch_2016, MM1S, RPE-1,
THP-1, U2OS
406267 93

GAG ...

EQS ...

Ribo-seq
GAG

2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
902347 147

GCT ...

AEA ...

Ribo-seq
GCT

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
902351 87

AGT ...

STG ...

Ribo-seq
AGT

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
902314 66

AGA ...

RDP ...

Ribo-seq
AGA

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
406259 126

GAT ...

DDK ...

Ribo-seq
GAT

2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
1829 168

CTG ...

LLF ...

Ribo-seq
CTG

23 sORFs_org_Human
    ncRNA
    sORF
BJ, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
loayza_puch_2016, MM1S, THP-1,
U2OS
1116 ENST00000361148 ZWINT-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1128 297

CTG ...

LSP ...

Ribo-seq
CTG

7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa, hES,
LCL, THP-1
1126 285

CTG ...

LGV ...

Ribo-seq
CTG

8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa, hES,
LCL, THP-1
1118 219

ATG ...

MLT ...

Ribo-seq
ATG

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
1124 237

CTG ...

LMH ...

Ribo-seq
CTG

20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1122 234

ATG ...

MHN ...

Ribo-seq
ATG

22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1120 234

CTG ...

LHA ...

Ribo-seq
CTG

28 sORFs_org_Human
    CDS
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
1296462 69

ATG ...

MSA ...

Ribo-seq
ATG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293T
1115 51

CTG ...

LAG ...

Ribo-seq
CTG

16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1102 ENST00000395405 ZWINT-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

280560 60

TTG ...

LSL ...

Ribo-seq
TTG

15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
895129 48

GGT ...

GSG ...

Ribo-seq
GGT

weak

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
901259 198

ATC ...

IRP ...

Ribo-seq
ATC

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
274497 33

TTG ...

LTG ...

Ribo-seq
TTG

moderate

13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, THP-1
96992 48

CTG ...

LER ...

Ribo-seq
CTG

moderate

24 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1132 120

TTG ...

LSS ...

Ribo-seq
TTG

20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
THP-1, U2OS
895123 93

GCA ...

ARR ...

Ribo-seq
GCA

moderate

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
404313 57

GGA ...

GGS ...

Ribo-seq
GGA

2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
1134 84

CTG ...

LLR ...

Ribo-seq
CTG

18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
THP-1
404311 33

CAG ...

QRR ...

Ribo-seq
CAG

moderate

2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
895121 51

TCA ...

SDG ...

Ribo-seq
TCA

strong

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1104 135

CTG ...

LRQ ...

Ribo-seq
CTG

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
404308 93

TTC ...

FQM ...

Ribo-seq
TTC

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
94946 63

CTG ...

LQP ...

Ribo-seq
CTG

moderate

21 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
2092793 180

TTG ...

LQS ...

Ribo-seq
TTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
895127 129

GGA ...

GTM ...

Ribo-seq
GGA

weak

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1130 138

TTG ...

LVF ...

Ribo-seq
TTG

10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, HEK293T, HeLa,
hES, LCL, THP-1,
U2OS
96990 30

CTG ...

LRW ...

Ribo-seq
CTG

weak

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
895117 171

ATC ...

IRP ...

Ribo-seq
ATC

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895119 42

AGA ...

RSI ...

Ribo-seq
AGA

moderate

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1110 261

CTG ...

LQI ...

Ribo-seq
CTG

12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, THP-1
404315 42

AGA ...

RWR ...

Ribo-seq
AGA

moderate

4 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
HCT116, HeLa, Jurkat,
THP-1
1106 141

CTG ...

LRL ...

Ribo-seq
CTG

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
895114 45

AGA ...

RHH ...

Ribo-seq
AGA

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1108 147

CTG ...

LRL ...

Ribo-seq
CTG

26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HCT116, HEK293, HeLa,
hES, HFF, Jurkat,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
901265 159

AGG ...

RKP ...

Ribo-seq
AGG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
94934 30

CTG ...

LLV ...

Ribo-seq
CTG

moderate

21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
280551 114

TTG ...

LLI ...

Ribo-seq
TTG

13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, U2OS
895135 45

GAC ...

DRG ...

Ribo-seq
GAC

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1815912 33

GTG ...

VNQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
2092795 195

CTG ...

LSC ...

Ribo-seq
CTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
406027 120

TTC ...

FQM ...

Ribo-seq
TTC

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
94940 114

CTG ...

LRL ...

Ribo-seq
CTG

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
94942 120

CTG ...

LRL ...

Ribo-seq
CTG

26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HCT116, HEK293, HeLa,
hES, HFF, Jurkat,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
280558 54

TTG ...

LWW ...

Ribo-seq
TTG

17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1, U2OS
1101 114

ATG ...

MIN ...

Ribo-seq
ATG

23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
901267 99

TGG ...

WLR ...

Ribo-seq
TGG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
94938 108

CTG ...

LRQ ...

Ribo-seq
CTG

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
1815917 45

CTG ...

LTS ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
280555 57

CTG ...

LKT ...

Ribo-seq
CTG

17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
94944 123

ATG ...

MER ...

Ribo-seq
ATG

strong

24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
895131 75

AGA ...

RQA ...

Ribo-seq
AGA

moderate

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1815915 111

TTG ...

LIS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
895125 114

GCT ...

AEG ...

Ribo-seq
GCT

strong

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895133 33

GGA ...

GGR ...

Ribo-seq
GGA

strong

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
274500 30

TTG ...

LQL ...

Ribo-seq
TTG

weak

21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
94936 87

ATG ...

MIN ...

Ribo-seq
ATG

21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
3302597 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1101 114

ATG ...

MIN ...

Predicted
ATG

1 Samandi2017
    sORF
1818168 102

ATG ...

MTS ...

Predicted
ATG

1 Samandi2017
    sORF
3302599 147

ATG ...

MEA ...

Ribo-seq
ATG

1 Erhard2018
    sORF
HFF
94944 123

ATG ...

MER ...

Predicted
ATG

1 Samandi2017
    sORF
3302596 834

ATG ...

MEA ...

Ribo-seq
ATG

1 Erhard2018

HFF
4285061 ENST00000318387 ZWINT-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1101 114

ATG ...

MIN ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1818164 ENST00000373944 ZWINT-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1818163 30

ATG ...

MEK ...

Ribo-seq
ATG

1 sORFs_org_Human
    Downstream
    sORF
HeLa
1818168 102

ATG ...

MTS ...

Ribo-seq
ATG

1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HeLa
1818166 45

CTG ...

LED ...

Ribo-seq
CTG

1 sORFs_org_Human
    Downstream
    sORF
HeLa

ORFs

77 ORFs
6 known transcripts
79 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

901261 201

AGA...

RSI...

AGA ncRNA
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
1 sORFs_org_Human
1834 204

CTG...

LKQ...

CTG ncRNA
sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
27 sORFs_org_Human
406273 240

CAG...

QEL...

CAG ncRNA
sORF
HCT116
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
1 sORFs_org_Human
1814 225

GTG...

VFQ...

GTG ncRNA
sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
27 sORFs_org_Human
1128 297

CTG...

LSP...

CTG Alternative
InCDS
Overlapping
sORF
HEK293, HeLa, hES,
LCL, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
7 sORFs_org_Human
1126 285

CTG...

LGV...

CTG Alternative
InCDS
Overlapping
sORF
HEK293, HeLa, hES,
LCL, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
8 sORFs_org_Human
280560 60

TTG...

LSL...

TTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
15 sORFs_org_Human
895129 48

GGT...

GSG...

GGT InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
weak 1 sORFs_org_Human
406261 210

GGA...

GNL...

GGA ncRNA
sORF
HCT116, Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
2 sORFs_org_Human
1112 267

GTG...

VRE...

GTG ncRNA
sORF
BJ, Blood, guo_2014,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
26 sORFs_org_Human
1816 54

GTG...

VSF...

GTG ncRNA
sORF
BJ, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS,
Blood, LCL
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
17 sORFs_org_Human
1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
6 sORFs_org_Human
901259 198

ATC...

IRP...

ATC Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
274497 33

TTG...

LTG...

TTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 13 sORFs_org_Human
1818 165

TTG...

LFP...

TTG ncRNA
sORF
BJ, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
loayza_puch_2016, MM1S, RPE-1,
THP-1, U2OS, Blood,
LCL, MDA-MB-231
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
23 sORFs_org_Human
1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
7 sORFs_org_Human
1101 114

ATG...

MIN...

ATG sORF
Alternative
InCDS
Overlapping
Brain_tumor, HEK293,
HeLa, HFF, BJ,
Blood, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3302597 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
4285061 ENST00000318387 ZWINT-201 protein_coding Ribo-seq
1 Johnstone2016
1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
23 sORFs_org_Human
406267 93

GAG...

EQS...

GAG ncRNA
sORF
HCT116, Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
2 sORFs_org_Human
1829 168

CTG...

LLF...

CTG ncRNA
sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1,
BJ, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293T, HeLa,
HFF, loayza_puch_2016, MM1S,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
7 sORFs_org_Human
1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
23 sORFs_org_Human
96992 48

CTG...

LER...

CTG Alternative
Overlapping
sORF
Upstream
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 24 sORFs_org_Human
1132 120

TTG...

LSS...

TTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
20 sORFs_org_Human
895123 93

GCA...

ARR...

GCA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
1818168 102

ATG...

MTS...

ATG sORF
Alternative
Downstream
Overlapping
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3302597 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1818164 ENST00000373944 ZWINT-203 protein_coding Ribo-seq
1 sORFs_org_Human
404313 57

GGA...

GGS...

GGA InCDS
Overlapping
sORF
HCT116, Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
2 sORFs_org_Human
1134 84

CTG...

LLR...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
18 sORFs_org_Human
404311 33

CAG...

QRR...

CAG Alternative
InCDS
Overlapping
sORF
HCT116, Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Human
895121 51

TCA...

SDG...

TCA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
strong 1 sORFs_org_Human
1104 135

CTG...

LRQ...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
24 sORFs_org_Human
404308 93

TTC...

FQM...

TTC Alternative
InCDS
Overlapping
sORF
HCT116
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
1295671 60

CTG...

LAG...

CTG ncRNA
sORF
HEK293T
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
1 sORFs_org_Human
3302599 147

ATG...

MEA...

ATG sORF
HFF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3302597 UNKNOWN_TRANSCRIPT Ribo-seq
1 Erhard2018
902347 147

GCT...

AEA...

GCT ncRNA
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
1 sORFs_org_Human
94946 63

CTG...

LQP...

CTG InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 21 sORFs_org_Human
2092793 180

TTG...

LQS...

TTG InCDS
Overlapping
sORF
HEK293
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
902351 87

AGT...

STG...

AGT ncRNA
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
1 sORFs_org_Human
895127 129

GGA...

GTM...

GGA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
weak 1 sORFs_org_Human
1130 138

TTG...

LVF...

TTG InCDS
Overlapping
sORF
HEK293, HEK293T, HeLa,
hES, LCL, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
10 sORFs_org_Human
96990 30

CTG...

LRW...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
weak 24 sORFs_org_Human
902314 66

AGA...

RDP...

AGA ncRNA
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
1 sORFs_org_Human
406259 126

GAT...

DDK...

GAT ncRNA
sORF
HCT116, Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1113 ENST00000460654 ZWINT-205 processed_transcript Ribo-seq
2 sORFs_org_Human
895117 171

ATC...

IRP...

ATC Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
895119 42

AGA...

RSI...

AGA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
1110 261

CTG...

LQI...

CTG Alternative
InCDS
Overlapping
sORF
Blood, HEK293, HeLa,
hES, LCL, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
12 sORFs_org_Human
404315 42

AGA...

RWR...

AGA Alternative
Overlapping
sORF
Upstream
HCT116, HeLa, Jurkat,
THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 4 sORFs_org_Human
1106 141

CTG...

LRL...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
24 sORFs_org_Human
895114 45

AGA...

RHH...

AGA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
1108 147

CTG...

LRL...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HCT116, HEK293, HeLa,
hES, HFF, Jurkat,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
26 sORFs_org_Human
901265 159

AGG...

RKP...

AGG Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
94934 30

CTG...

LLV...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 21 sORFs_org_Human
1118 219

ATG...

MLT...

ATG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
24 sORFs_org_Human
1124 237

CTG...

LMH...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
20 sORFs_org_Human
1818163 30

ATG...

MEK...

ATG Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1818164 ENST00000373944 ZWINT-203 protein_coding Ribo-seq
1 sORFs_org_Human
280551 114

TTG...

LLI...

TTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
13 sORFs_org_Human
895135 45

GAC...

DRG...

GAC InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
1815912 33

GTG...

VNQ...

GTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
2092795 195

CTG...

LSC...

CTG InCDS
Overlapping
sORF
HEK293
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
1122 234

ATG...

MHN...

ATG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
22 sORFs_org_Human
1841 279

TTG...

LSS...

TTG ncRNA
sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
19 sORFs_org_Human
1120 234

CTG...

LHA...

CTG CDS
sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
28 sORFs_org_Human
406027 120

TTC...

FQM...

TTC Alternative
InCDS
Overlapping
sORF
HCT116
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
94940 114

CTG...

LRL...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
24 sORFs_org_Human
94942 120

CTG...

LRL...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HCT116, HEK293, HeLa,
hES, HFF, Jurkat,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
26 sORFs_org_Human
280558 54

TTG...

LWW...

TTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
17 sORFs_org_Human
901267 99

TGG...

WLR...

TGG Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
1 sORFs_org_Human
1818166 45

CTG...

LED...

CTG Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1818164 ENST00000373944 ZWINT-203 protein_coding Ribo-seq
1 sORFs_org_Human
94944 123

ATG...

MER...

ATG sORF
Alternative
InCDS
Overlapping
BJ, Blood,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3302597 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
strong 24 sORFs_org_Human
94938 108

CTG...

LRQ...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
24 sORFs_org_Human
1815917 45

CTG...

LTS...

CTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
weak 1 sORFs_org_Human
280555 57

CTG...

LKT...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
17 sORFs_org_Human
1296462 69

ATG...

MSA...

ATG Alternative
InCDS
Overlapping
sORF
HEK293T
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
1 sORFs_org_Human
3302596 834

ATG...

MEA...

ATG
HFF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3302597 UNKNOWN_TRANSCRIPT Ribo-seq
1 Erhard2018
895131 75

AGA...

RQA...

AGA InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
1815915 111

TTG...

LIS...

TTG Alternative
Downstream
sORF
HeLa
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Human
895125 114

GCT...

AEG...

GCT Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
strong 1 sORFs_org_Human
895133 33

GGA...

GGR...

GGA Alternative
InCDS
Overlapping
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
strong 1 sORFs_org_Human
274500 30

TTG...

LQL...

TTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
weak 21 sORFs_org_Human
1295673 78

ATG...

MSA...

ATG ncRNA
sORF
HEK293T
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1842 ENST00000478181 ZWINT-207 processed_transcript Ribo-seq
1 sORFs_org_Human
94936 87

ATG...

MIN...

ATG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1102 ENST00000395405 ZWINT-204 protein_coding Ribo-seq
21 sORFs_org_Human
1115 51

CTG...

LAG...

CTG Alternative
InCDS
Overlapping
sORF
BJ, Blood, HEK293,
HEK293T, HeLa, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1116 ENST00000361148 ZWINT-202 protein_coding Ribo-seq
16 sORFs_org_Human

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unitary_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS