Transcript 1102 | MetamORF

Transcript

ID CARD

MetamORF ID

1102

ENST00000395405

Name

ZWINT-204

Strand

Biotype

protein_coding

Start-end positions

56357438-56361273

CDS Start-stop positions

56358418-56361236

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

HGNC:13195

Aliases

ENSG00000122952,
HGNC:13195, KNTC2AP, NCBI:11130,
OFF:ZWINT, SIP30, ZWINT,
Zwint1

Chr 10

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
280560	60	TTG ...	LSL ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
895129	48	GGT ...	GSG ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
901259	198	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
274497	33	TTG ...	LTG ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
96992	48	CTG ...	LER ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1132	120	TTG ...	LSS ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
895123	93	GCA ...	ARR ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
404313	57	GGA ...	GGS ...	Ribo-seq	GGA		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
1134	84	CTG ...	LLR ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
404311	33	CAG ...	QRR ...	Ribo-seq	CAG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
895121	51	TCA ...	SDG ...	Ribo-seq	TCA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1104	135	CTG ...	LRQ ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404308	93	TTC ...	FQM ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
94946	63	CTG ...	LQP ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2092793	180	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
895127	129	GGA ...	GTM ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1130	138	TTG ...	LVF ...	Ribo-seq	TTG		10	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, hES, LCL, THP-1, U2OS
96990	30	CTG ...	LRW ...	Ribo-seq	CTG	weak	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895117	171	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895119	42	AGA ...	RSI ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1110	261	CTG ...	LQI ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, THP-1
404315	42	AGA ...	RWR ...	Ribo-seq	AGA	moderate	4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HeLa, Jurkat, THP-1
1106	141	CTG ...	LRL ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895114	45	AGA ...	RHH ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1108	147	CTG ...	LRL ...	Ribo-seq	CTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HCT116, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
901265	159	AGG ...	RKP ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
94934	30	CTG ...	LLV ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
280551	114	TTG ...	LLI ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, U2OS
895135	45	GAC ...	DRG ...	Ribo-seq	GAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1815912	33	GTG ...	VNQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2092795	195	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
406027	120	TTC ...	FQM ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
94940	114	CTG ...	LRL ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
94942	120	CTG ...	LRL ...	Ribo-seq	CTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HCT116, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
280558	54	TTG ...	LWW ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1101	114	ATG ...	MIN ...	Ribo-seq	ATG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
901267	99	TGG ...	WLR ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
94938	108	CTG ...	LRQ ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1815917	45	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
280555	57	CTG ...	LKT ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
94944	123	ATG ...	MER ...	Ribo-seq	ATG	strong	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895131	75	AGA ...	RQA ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1815915	111	TTG ...	LIS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
895125	114	GCT ...	AEG ...	Ribo-seq	GCT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895133	33	GGA ...	GGR ...	Ribo-seq	GGA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
274500	30	TTG ...	LQL ...	Ribo-seq	TTG	weak	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
94936	87	ATG ...	MIN ...	Ribo-seq	ATG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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