Transcript 1113 | MetamORF

Transcript

ID CARD

MetamORF ID

1113

ENST00000460654

Name

ZWINT-205

Strand

Biotype

processed_transcript

Start-end positions

56357816-56359731

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:13195

Aliases

ENSG00000122952,
HGNC:13195, KNTC2AP, NCBI:11130,
OFF:ZWINT, SIP30, ZWINT,
Zwint1

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1834	204	CTG ...	LKQ ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406273	240	CAG ...	QEL ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
1814	225	GTG ...	VFQ ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406261	210	GGA ...	GNL ...	Ribo-seq	GGA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1112	267	GTG ...	VRE ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1816	54	GTG ...	VSF ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1818	165	TTG ...	LFP ...	Ribo-seq	TTG		23	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
406267	93	GAG ...	EQS ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
902347	147	GCT ...	AEA ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
902351	87	AGT ...	STG ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
902314	66	AGA ...	RDP ...	Ribo-seq	AGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
406259	126	GAT ...	DDK ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1829	168	CTG ...	LLF ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, THP-1, U2OS

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